Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f24
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 453 DDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYG 346
           DD D+D++   G+  + +L  +   +       YYG
Sbjct: 399 DDDDDDVEAANGKPAEGMLTDVFHVQETDKYDAYYG 434


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 450 DIDEDLDTVKGESWKKLLRTLIEAENLC 367
           DI   L   + E +KK+ + LI    LC
Sbjct: 246 DIGPPLHADQAEEYKKIQQILIRMNKLC 273


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 310 AARAPRSEHRSQTLRGQRAPGKRS 239
           A  +P+S+   QTLR Q +P + S
Sbjct: 399 ATTSPQSQSTIQTLRPQVSPDRTS 422


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 727 PRLXGTMLIACITQYKLL 780
           P L  + L+ C+++YK +
Sbjct: 112 PHLKASKLVQCVSKYKTM 129


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 514 GVTSQTDVLRYVFLPVFHYSLN 579
           G+   TD+L Y  L   HYS+N
Sbjct: 225 GLGFTTDLLSYNILLRRHYSMN 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,552
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)