Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f22
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 32 0.26
10_08_0520 - 18495118-18498237 29 1.9
01_01_1127 + 8930593-8932681,8932812-8933401 29 1.9
09_04_0500 - 18120287-18122233 29 2.5
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 29 2.5
11_03_0128 - 10437407-10438049,10438097-10438272 28 3.3
06_01_0648 + 4689755-4690693 28 4.3
04_01_0051 - 542615-544066 28 4.3
08_02_1080 - 24197514-24199415 27 7.5
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 27 7.5
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 27 10.0
05_07_0005 + 26997352-26998674 27 10.0
05_04_0064 - 17613070-17614749 27 10.0
03_03_0067 + 14230211-14231506 27 10.0
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 31.9 bits (69), Expect = 0.26
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 44 IRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 154
++T T + +S RPR D+E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 126 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 25
RAR+ L A G + +W A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 126 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 25
RAR+ L A G + +W A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 171 AVSVPERRSSDEYGRRARVELRSASWHR 88
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -1
Query: 188 WAFEVTL--SPFPSDAPLTSMDV-ERALSFAPRRGTAAFKSSGGCSLSW 51
+ FE TL PF + + DV +A+ A A F S GGC++SW
Sbjct: 54 FTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 254 SSSRGTEYSTTCRTARKAYSKARMACDTGGKAS 352
S S + STTCRT +A + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_01_0648 + 4689755-4690693
Length = 312
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 40 QHPNHDSEQPPELLKAAVPRRGAKLNARSTSILV-----RGASLGNGDSVTSNA 186
+HP H PP L+ A P + +AR LV R A+ DSVTS++
Sbjct: 193 RHPFHPPPPPPPLM--AAPSTSSSASARRKESLVIDIPSRSAAAAAADSVTSSS 244
>04_01_0051 - 542615-544066
Length = 483
Score = 27.9 bits (59), Expect = 4.3
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = +2
Query: 98 DAERSSTRA-----LRPYSSEERRSGTETA*LQTPIAVLIRVWRLTDHFTTASNGSDSSS 262
DAE SS L P +S + SGT A L TP+ + WR D+ TTA+ S
Sbjct: 62 DAEISSNNGSTILHLTPAASSNK-SGT--ALLPTPVTL----WRRLDYQTTAAQPGSYSK 114
Query: 263 RGTEYSTTCRTARKAYSKARM--ACDTGGKASWLLKAWLF*ILKT 391
+ +T+ T R Y+ A+ A D A+ L F I+ T
Sbjct: 115 QDASLNTSF-TMRVQYANAKYSPADDAAAAAAGLNNGLAFVIVPT 158
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 171 AVSVPERRSSDEYGRRARVELRSASWHR 88
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 16 KRP-VADIPQHPNHDSEQPPELLK 84
+RP V +P HP HD + P +LK
Sbjct: 825 RRPNVPRMPAHPRHDGSRRPSILK 848
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 16 KRPVADIPQHPNHDSEQPPELLKAAVPRRGAKL 114
+ P A P P+H + +PP + AA PR+ A L
Sbjct: 232 RHPAAHPPPPPHHPAPRPPPPM-AAAPRQPAAL 263
>05_07_0005 + 26997352-26998674
Length = 440
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 94 PRRGAKLNARSTSILVRGASLGNG 165
P+ G +LNA S +I+++GA L +G
Sbjct: 156 PKLGVRLNAVSYNIILKGACLRDG 179
>05_04_0064 - 17613070-17614749
Length = 559
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 230 TTASNGSDSSSRGTEYSTTCRTARKAYSKARMACDTG 340
+++S+ S S+R + YS+T + R C TG
Sbjct: 37 SSSSSSSSRSARSSNYSSTVSSTESGAGSHRRRCKTG 73
>03_03_0067 + 14230211-14231506
Length = 431
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +2
Query: 149 RRSGTETA*LQTPIAVLIRVWRLTDHFTTAS----NGSDSSSRGTEYSTTCRTARKAYSK 316
RRSG A + P A + +W L D+ +S D S G RT R +S
Sbjct: 281 RRSGKLCAFVHEPSASALGMWMLEDYSDPSSWRLERRIDYSRHGAGSRNVARTFRNKFSA 340
Query: 317 ARMACD 334
A A +
Sbjct: 341 ATTAVE 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,233
Number of Sequences: 37544
Number of extensions: 226876
Number of successful extensions: 912
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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