Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f21
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   4.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   4.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   7.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   7.0  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 660 QCCQNKFFNISCKIYIASFLNIEVIVSLSTSLNL 761
           +C +  FF+ S K+Y    ++I VI   S+S NL
Sbjct: 602 KCVRGGFFSYSSKMYKYDRVSIPVITRASSSRNL 635


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 760 KFNDVLKETITSIFRKEAM*ILQLILKN---LFWQHCVQTG 647
           +F+DVL  +   +  K+A+ I+  +LKN   L WQ   Q G
Sbjct: 613 QFHDVLPGSCIEMVYKDAIPIMSKVLKNTEALLWQAIEQLG 653


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 781 NFFDFXGKFNDVLKETITSIFRKEAM*I--LQLILKNLFWQHCVQTGTLH 638
           N F F  KF+ +    +++I  ++A+ I  L L L+   +  C QTGT +
Sbjct: 212 NLFLFYEKFSYLFTHLLSAIKSRDALSIPSLVLSLQEELFNLCQQTGTFY 261


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 358 VPFSEHFNTLRLCSLFLPSILDIKSS 435
           V F EH   L  C +FL   LD + S
Sbjct: 195 VSFKEHITQLNTCIMFLEENLDFQES 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,170
Number of Sequences: 5004
Number of extensions: 62985
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)