Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f21
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   5.6  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   7.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 781 NFFDFXGKFNDVLKETITSIFRKE 710
           N +D  G FN+V+   I  IF  E
Sbjct: 71  NGYDDGGNFNEVVIREIAEIFLDE 94


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 781 NFFDFXGKFNDVLKETITSIFRKE 710
           N +D  G FN+V+   I  I+  E
Sbjct: 71  NAYDDGGNFNEVVVREIAEIYLDE 94


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 161 YVGVTNLIFFMTCVVKKYAICIENLKTIYFY 253
           Y+  TN I      +  ++ CI  +  IY+Y
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIYYY 231


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 392 CAHYFYPPYSTLKAAYKMASHNIMQKKCYIAFCSS 496
           C ++FY  Y+TL + Y      +M +  Y  FC++
Sbjct: 197 CQNFFYQIYATLGSFY--IPLFVMIQVYYKIFCAA 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,718
Number of Sequences: 438
Number of extensions: 4317
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)