Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f20
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.88 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    28   1.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   2.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.0  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    27   2.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.7  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   2.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   6.2  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   8.2  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 236 KDKHTHSKTKLHFYEDDKNKDPSILPDVTSDKFVEHTAEE 117
           K++++H+K KL    +D NK+   L  + SD    +T+ E
Sbjct: 36  KNRNSHTKNKLESGTNDNNKNKEDLSKLYSDVTTSNTSHE 75


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = -2

Query: 200 FYEDDKNKDPSILPDVTS-------DKFVEHTAEELNRIYSDSFIKK 81
           FY  +K ++P    ++T        D F++H  +E NR+  D+  KK
Sbjct: 280 FYNLEKQREPVSTTELTRSFGWNSFDSFMQHDIQEFNRVLQDNLEKK 326


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -1

Query: 639 LGLRSLVHESLAQPHGLSVKKPHGACSCMMKSPTSFNHQTDPTKICTHTDKYEVASVPSS 460
           L L S+   ++AQ     +   +   S   +S +S N   D T +  +TD  +VA+V   
Sbjct: 626 LNLNSMKLPAVAQTKSQPLVALNSEGSSDFESKSSDNTSLDGTPL-QNTDFKKVATVEDD 684

Query: 459 LPYTQYPAFYVPFQS 415
            P+ +   F  PF S
Sbjct: 685 SPFDELDKFSSPFSS 699


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 242 MKKDKHTHSKTKLHFYEDDKNKDPSILPDVTSDK 141
           +  D H ++ T    + D +N DP   P   S K
Sbjct: 361 VSSDNHNNTTTSSQVHPDSRNPDPKAAPKAVSQK 394


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 212 TKLHFYEDDKNKDPSILPDVTSDKFVEHTAEELNRIYSDSFIKK 81
           TK HF E D  K   IL +V +DK       + N I +   I+K
Sbjct: 53  TKWHFKEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEK 96


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 527 IKRILQKYVHIQISTRLLAC--HRVYRIHSIQLFMC 426
           I+ +L  Y H  I+T LL+C  H++Y++     F C
Sbjct: 847 IEELLTVYEHFDIATTLLSCWDHQLYQVILHISFKC 882


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 618 HESLAQPHGLSVKKPHGACSCMMKSPTSFNHQTDP 514
           H  L +   +S +KPH A S  +K+PT+   + +P
Sbjct: 191 HTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEP 225


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 281 YYDKETDDYLGIDMKKDKHTHSKTK-LHFYEDDKNKDPSILPDVTSDKFVEHT 126
           Y   E  ++ G   + + H +   K + +Y  D+NK+ SIL  + S + VE T
Sbjct: 773 YSANEIYEFCGTHSRAEVHKNEVLKRMAYYLIDENKEISILRRILSLRIVEPT 825


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 459 LPYTQYPAFYVPFQSYYVTAVTEDIYKYTYYQPYIMNNLNHRKKKEASKNDNF 301
           LP  +   F  P  SY+ T+  E   K+     YI+ NL    +++ S    F
Sbjct: 724 LPTLEINTFNCPAISYFETSFDECFSKFASSDNYIIGNLLKTNQEDLSNLPTF 776


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 199 FMKTTRIRTLLYYQM*HPTNSSNTQPRN*TEFI 101
           F   T+   LL   + HPT SS+ QP   T FI
Sbjct: 165 FQLNTQANKLLSILLWHPTISSHIQPETATVFI 197


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 296 YSDDLYYDKETDDYLGIDMKKDKHTHSKTKLHFYEDDKNKDPSILP 159
           + + +  DK+ DD L  + K + +T S  +      + N  PS++P
Sbjct: 544 HENSVEIDKKADDSLPSNNKTEGYTPSVVREEKNYSEPNASPSVIP 589


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 227 HTHSKTKLHFYEDDKNKDPSILPDVTSDKFVEHTAEELNRIYSDSFIK 84
           +T SK KLHFYE   N     L  +T+ K ++     L +IY+  +++
Sbjct: 73  YTTSKYKLHFYETPTNLR---LIFITNPK-IDSLTHVLQQIYTTLYVE 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,611
Number of Sequences: 5004
Number of extensions: 64851
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)