Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f20
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    29   3.7  
12_02_0851 + 23668618-23670639                                         28   6.5  
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    28   8.6  

>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 509 FVGSV*WLKD-VGLFIMQLHAPC-GFLTDSPWGCANDSCTRLLN 634
           F+ S+ WL   +  F   +HA    FL+D  W C  D  + +LN
Sbjct: 474 FLSSIEWLTSTIHTFYRDVHAHLISFLSDLKWSCKIDLVSNMLN 517


>12_02_0851 + 23668618-23670639
          Length = 673

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 687 TRRVGNTFVENSENKVLGLRSLVHESLAQPHG-----LSVKKPHGACSCMMKSPTSFNHQ 523
           T+R+ + F E  + ++ G  SLVH+SL          L   + + A  C  K    F++Q
Sbjct: 330 TQRLAHCFAEGLQARIAGTGSLVHQSLVAKRTSAVDILQAYQLYMAAICFKKVSFIFSNQ 389

Query: 522 T 520
           T
Sbjct: 390 T 390


>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 437 AGYCVYGKLDGTLATSYLSVCVHIFVGSV 523
           AG C +GK+  TL  S L  C  + +G +
Sbjct: 183 AGKCFWGKIPITLLNSSLETCADLILGHI 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,786,916
Number of Sequences: 37544
Number of extensions: 356227
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)