Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f20
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   6.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.9  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 524 KRILQKYVHIQISTRLLACHRVYRIHSIQLFMCLSNHI 411
           ++ LQ  + ++I   L    R+ RIH  +  + LSN +
Sbjct: 349 EKTLQMIISVKIIQNLAYSGRMNRIHKNEYMLALSNRM 386


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 236 SSYRYPNNHQSLYHNTDRHYK 298
           ++Y Y NN+ +  +N + +YK
Sbjct: 90  NNYNYNNNYNNYNNNYNTNYK 110


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 257 NHQSLYHNTDRHYKPKL 307
           +HQS +H     YKP++
Sbjct: 160 SHQSYHHMDSVEYKPEI 176


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NNHQSLYHNTDR 289
           NNH+S+YH   +
Sbjct: 418 NNHKSIYHRRQK 429


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 584 TDSPWGCANDSCTRLLNPNTLFSEFSTKVFPTRLVSP 694
           +D  W C     TR  N  T  ++      P  +VSP
Sbjct: 527 SDDYWNCVIQYNTRAENHQTGTAKMGPSYDPMAVVSP 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,231
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)