Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f18
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...   241   1e-64
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    40   3e-04
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    35   0.011
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    27   3.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   3.0  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   6.9  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 846

 Score =  241 bits (589), Expect = 1e-64
 Identities = 124/237 (52%), Positives = 153/237 (64%)
 Frame = -3

Query: 773  HKFLAHVIGFDSVDDESKPEIPNLSEHMRTPEEWNDXXXXXXXXXXXXXXXXMVTLNELR 594
            H FL  VIGFDSVDDESKPE     +    P+ W+                 M +LN  R
Sbjct: 531  HVFLQRVIGFDSVDDESKPERRTFRK-FPYPKHWDINLNPPYSYWLYYMYANMTSLNSWR 589

Query: 593  KEQGLNTFVLRPHCGEAGPAAHLSAGFLLAENISHGLILRKVPVXXXXXXXXXXXXAMSP 414
            K +G NTFVLRPHCGEAG   HL++ FLL+  I+HG++LRKVP             AMSP
Sbjct: 590  KIRGFNTFVLRPHCGEAGDTDHLASAFLLSHGINHGILLRKVPFLQYLWYLDQIPIAMSP 649

Query: 413  LSNNSLFLNYHRNPLPEYFARGLRVTLSTDDPLQFHFTREPLMEEYSIAAQAWKLSSCDM 234
            LSNN+LFL Y +NP   YF RGL V+LSTDDPLQF FTREPL+EEY++AAQ +KLS+ DM
Sbjct: 650  LSNNALFLAYDKNPFLTYFKRGLNVSLSTDDPLQFAFTREPLIEEYAVAAQIYKLSAVDM 709

Query: 233  CELARNSVLMSGFPHEMKQYWLGAQYVHEGPAGNDITKTNVPDVRISFRHETLLDEL 63
            CELARNSVL SGF  ++K+ WLG  +        DI +TNVP +R+++R  TL  E+
Sbjct: 710  CELARNSVLQSGFERQLKERWLGVDF-------QDIDRTNVPIIRLAYRALTLTQEI 759


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 25/114 (21%), Positives = 50/114 (43%)
 Frame = -3

Query: 503 ENISHGLILRKVPVXXXXXXXXXXXXAMSPLSNNSLFLNYHRNPLPEYFARGLRVTLSTD 324
           E I HG+ +   P              + P SN  ++    +  +      GL+VT+++D
Sbjct: 219 ERIDHGINILDDPELIKLALERNIPFTVCPFSNEIVYPGKAQPEIRIMLDTGLKVTINSD 278

Query: 323 DPLQFHFTREPLMEEYSIAAQAWKLSSCDMCELARNSVLMSGFPHEMKQYWLGA 162
           DP   H     + E +++A +   L+  ++ ++ RNS   +    E + ++L A
Sbjct: 279 DPAYMHCFY--ITENFNLAQKGASLTKKELVQICRNSFEAAWISEEKRNHYLEA 330


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = -3

Query: 419 SPLSNNSLFLNYHRNPLPEY-FARGLRVTLSTDDPLQFHFTREPLMEEYSIAAQAWKLS- 246
           S + N  + L Y R P+P+Y F +GL  TL   +    H +++  +E + +     K S 
Sbjct: 194 SDICNEQIELEYKRKPIPDYDFMKGLETTL--QELYVEHQSKKRRLELFQLTNNHQKNSE 251

Query: 245 SCDMCEL 225
           +C+MC L
Sbjct: 252 ACEMCRL 258


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 175 YCFISCGNPD-MSTEFLASSHMSHELSFHACAAILYSSISG 294
           Y     G+PD M+ E L   + +H + + +   I+Y  +SG
Sbjct: 399 YAHSVVGSPDYMAPEVLRGENYNHSVDYWSLGCIMYECLSG 439


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 127 MSFPAGPSCTYCAPSQYCFISCGNPDMSTEFLASSHMSHEL---SFHACAAILYSSISGS 297
           +S PA P CT C PS   F+      ++ +FLA S     L   +   C  +  + I   
Sbjct: 159 LSIPA-PMCTECWPSSLTFVGFSG-GLTDDFLAESVFPPSLKSINITQCPLLTDAGIFSL 216

Query: 298 LVKWNCRGSSVLRVTRSPLAKYSGSG 375
           L K     SSV    + P+ + S SG
Sbjct: 217 LSKIGPNLSSV--CVQYPMPELSRSG 240


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 447 VRVLEHGHLSQDESVRYVLGEEESGAQVRGGPGL 548
           ++VL+  ++ ++  V+YV  E +S  ++ G PG+
Sbjct: 82  IKVLDKKYIVKENKVKYVNIERDSMMRLNGFPGI 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,144
Number of Sequences: 5004
Number of extensions: 43791
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)