Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f18
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 274 4e-74
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 60 1e-09
06_03_0892 - 25713502-25714125,25714309-25715199 30 2.3
03_04_0229 - 19018521-19018927,19019132-19019795 29 5.4
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621 28 9.5
06_03_0897 + 25762154-25763056,25764189-25764800 28 9.5
>07_03_1778 + 29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 274 bits (673), Expect = 4e-74
Identities = 130/238 (54%), Positives = 158/238 (66%)
Frame = -3
Query: 773 HKFLAHVIGFDSVDDESKPEIPNLSEHMRTPEEWNDXXXXXXXXXXXXXXXXMVTLNELR 594
H FL V+G D VDDESKPE ++HM TPE+W + + TLN+LR
Sbjct: 564 HVFLQQVVGLDLVDDESKPE-RRPTKHMPTPEQWTNVFNPAYAYYVYYCYANLYTLNKLR 622
Query: 593 KEQGLNTFVLRPHCGEAGPAAHLSAGFLLAENISHGLILRKVPVXXXXXXXXXXXXAMSP 414
+ +G+ T LRPHCGEAG HL+A FL + NI+HG+ L+K PV AMSP
Sbjct: 623 ESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQIGLAMSP 682
Query: 413 LSNNSLFLNYHRNPLPEYFARGLRVTLSTDDPLQFHFTREPLMEEYSIAAQAWKLSSCDM 234
LSNNSLF++YHRNP P +F RGL V+LSTDDPLQ H T+EPL+EEYSIAA WKLSSCD+
Sbjct: 683 LSNNSLFIDYHRNPFPTFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASLWKLSSCDL 742
Query: 233 CELARNSVLMSGFPHEMKQYWLGAQYVHEGPAGNDITKTNVPDVRISFRHETLLDELD 60
CE+ARNSV SGF H +K +W+G Y G GNDI +TNVP +RI FRH L E D
Sbjct: 743 CEIARNSVYQSGFSHRLKSHWIGRNYYKRGHDGNDIHQTNVPHIRIEFRHTLLCLESD 800
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/104 (39%), Positives = 50/104 (48%)
Frame = -3
Query: 773 HKFLAHVIGFDSVDDESKPEIPNLSEHMRTPEEWNDXXXXXXXXXXXXXXXXMVTLNELR 594
H FL V+G D VDDESKPE ++HM TPE+W + + TLN
Sbjct: 641 HVFLKQVVGLDLVDDESKPE-RRPTKHMPTPEQWTNVFNPAFSYYAYYCYANLYTLN--- 696
Query: 593 KEQGLNTFVLRPHCGEAGPAAHLSAGFLLAENISHGLILRKVPV 462
+AG HL+A FLL NISHG+ LRK PV
Sbjct: 697 ---------------KAGDIDHLAATFLLCHNISHGINLRKSPV 725
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -3
Query: 176 YWLGAQYVHEGPAGNDITKTNVPDVRISFR 87
+W+G Y GP GNDI KTNVP +R+ FR
Sbjct: 736 HWIGKNYYKRGPTGNDIHKTNVPHIRVQFR 765
>06_03_0892 - 25713502-25714125,25714309-25715199
Length = 504
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +3
Query: 201 GHEHRVSGQLAHVARAELPRLRGYTVLLHQRLPSKMELQRIISAQSDPESSREVLWQR 374
GH H + G L HVA +L R G +LL RL EL +++ S E++REV+ R
Sbjct: 46 GHLHHLVGALPHVAMRDLARRHGPLMLL--RLG---ELPVVVA--SSAEAAREVMKTR 96
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 377 NPLPEYFARGLRVTLSTDDPLQFHFTREPLMEEYSIAAQAW 255
N L + R V L+ DP++F F +E + E SI + W
Sbjct: 69 NTLNYFSKRKPPVPLAPPDPIEFQFLKETVRELTSIMSDEW 109
>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
Length = 230
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 297 GAADGGVQYSRAGVEAQLVRHVRAGQKLCAHVRVPARD 184
G GGV+ + V+ Q R V+ QK+ H+ VP D
Sbjct: 7 GLRGGGVESRKPSVDEQFARFVKVIQKI--HINVPLLD 42
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 201 GHEHRVSGQLAHVARAELPRLRGYTVLLH-QRLP 299
GH H ++G L H A ++ R G VLL RLP
Sbjct: 53 GHLHHLAGALQHRAMRDIARRHGPLVLLRLGRLP 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,337
Number of Sequences: 37544
Number of extensions: 335611
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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