Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f17
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    30   0.41 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    29   0.72 
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   2.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   3.8  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   5.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   6.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.7  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   8.8  

>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 267 GRQSLAT*METGPHSSCLSRVRRSQPGRRHLYL 169
           G+ +LAT  +T P++SCL  +   Q G+ H+ L
Sbjct: 323 GKFALATLPQTWPNTSCLDLLNYCQEGKSHMIL 355


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 4   FKNYKNINDSSVALQLNFLLRCQTCPRMLKGF 99
           F +Y   N S++A  +NF+L+C  C R +  F
Sbjct: 106 FADYAKDNQSALANLINFILKCCGCNRAINVF 137


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 650 EAGVKSIKFHMHRVLGNCNLTYEELITVLTQIEAI 546
           E    S+ FH+ + L + NLT  +L  V+TQ++ +
Sbjct: 24  ETTSNSVTFHVFQQLDSTNLTNYQLENVITQVKEL 58


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 304 WLVRHFVLCCSSLMYSFDHLAQKCCRISS 390
           W ++ FV CC  ++Y F  L     +ISS
Sbjct: 689 WPIQMFVACCGYVVYYFSSLHFGASQISS 717


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +1

Query: 376 CRISSNRWNLVRLLSRQSLYSAAGIAVRGWPMRKCPGVSGIMSSGSLDSGVSGREFNIAS 555
           C I+S  W L +  S+     +A  A++ W +R    V  + ++ + +   S R+F + +
Sbjct: 288 CSITSATW-LPQSTSQVISSCSANSALKLWDLRTVHTVRPLPAATTPELTTSKRDFGVTN 346

Query: 556 IC 561
           +C
Sbjct: 347 VC 348


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 749  LKSNCNSLPDALIEEGINFHLCPPYSP 669
            ++S  + L  AL++EG +F+LC P  P
Sbjct: 940  MRSTKDMLKKALMDEGGSFYLCGPTWP 966


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 396 LEPGEIA*PAVLVLSSRHCS 455
           L+P EI  P +L L S+HCS
Sbjct: 299 LQPAEIWLPQLLELPSKHCS 318


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 500 MMPLTPGHFLIGQPLTAMPAAEY 432
           MM  TPG FLIG  L+ +P   +
Sbjct: 221 MMMQTPGGFLIGYLLSRLPGTNW 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,795
Number of Sequences: 5004
Number of extensions: 66815
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)