Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f17
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0181 + 7541831-7541971,7542407-7543279,7544101-7544301,754...    30   2.3  
08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847     28   7.0  

>02_02_0181 +
           7541831-7541971,7542407-7543279,7544101-7544301,
           7544358-7544595,7545732-7545922
          Length = 547

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 755 TFLKSNCNS-LPDALI--EEGINFHLCPPYSPHFGGLW 651
           T   S+CN+ + + L+  EEG+NFH  PP   H  G+W
Sbjct: 71  TTTTSDCNTDMSEDLVKREEGMNFHCDPPLHEH-TGIW 107


>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
          Length = 426

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -1

Query: 359 WSKEYISELQQRTKWRTNQSSLKLHSLVVVKEDNLSPLKWRLGRIVAVYPGSDGVNRVAD 180
           WS+  ++ L       + +  L L +  + K D  + +  R G+++  Y  S  +   A+
Sbjct: 35  WSRSRLTSLLAGLPVLSGEGGLALRTTALDKLDGEAYVNIRKGKVIPGYELSLTLAWEAE 94

Query: 179 ICTSSGVIKRFFNKICPLIAD 117
             T SGV+K       P +AD
Sbjct: 95  ATTESGVVKVSGAAEVPYLAD 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,610,897
Number of Sequences: 37544
Number of extensions: 465728
Number of successful extensions: 1139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)