Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f17
         (755 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...   201   2e-53
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         26   1.4  
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    25   2.5  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    25   2.5  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    25   2.5  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         23   7.7  
AY341146-1|AAR13710.1|  164|Anopheles gambiae aminopeptidase N p...    23   7.7  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score =  201 bits (490), Expect = 2e-53
 Identities = 90/196 (45%), Positives = 130/196 (66%), Gaps = 1/196 (0%)
 Frame = -1

Query: 710  EEGINFHLCPPYSPHFGGLWEAGVKSIKFHMHRVLGNCNLTYEELITVLTQIEAILNSRP 531
            E  + +   PP +PHFGGLWEA VKS+KFH+ RVLG  +LT+E+L T+L +IEA LNSRP
Sbjct: 1527 ERDMKWKFTPPAAPHFGGLWEAAVKSMKFHLKRVLGTGHLTFEDLSTLLAEIEACLNSRP 1586

Query: 530  LTPLSSDPDDMMPLTPGHFLIGQPLTAMPAAEYKDCRLSNLTRFQRLELMRQHFWARWSK 351
            +T +S DP+DM  LTPGHFL+G  L  +   +  D   + L  ++ ++   QH W RW +
Sbjct: 1587 ITAISEDPNDMEALTPGHFLVGNHLQTVADVDIADVPTNRLNHWRLIQKHMQHIWNRWHR 1646

Query: 350  EYISELQQRTKWRTNQSSLKLHSLVVVKEDNLSPLKWRLGRIVAVYPGSDGVNRVADI-C 174
            EY+S LQ+R KW  N  S++   LV+++EDN++  KW + R+V ++PG DGV RV  + C
Sbjct: 1647 EYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAVSKWPMARVVDLHPGKDGVTRVVTLKC 1706

Query: 173  TSSGVIKRFFNKICPL 126
             +   I+R  ++I PL
Sbjct: 1707 ANGKEIRRPIHRIAPL 1722


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 457 RGWPMRKCPGVSGIMSSGSLDSGVSGREFNIAS 555
           RGW   +   VSG  SS S+ S  SG E + AS
Sbjct: 553 RGWSSPQASPVSGYDSSTSISSVCSGPEEDNAS 585


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 323 TKWRTNQSSLKLHSLVVVKEDNLSPLKWRLGRIVA--VYPGSDGVNRVADICTS 168
           T  RTN   +     V+ ++  L+P+    GRI+A  ++ GS+     AD+ T+
Sbjct: 350 TDHRTNVPHIYAVGDVLYRKPELTPVAIHAGRIIARRLFGGSEERMDYADVATT 403


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 323 TKWRTNQSSLKLHSLVVVKEDNLSPLKWRLGRIVA--VYPGSDGVNRVADICTS 168
           T  RTN   +     V+ ++  L+P+    GRI+A  ++ GS+     AD+ T+
Sbjct: 326 TDHRTNVPHIYAVGDVLYRKPELTPVAIHAGRIIARRLFGGSEERMDYADVATT 379


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 323 TKWRTNQSSLKLHSLVVVKEDNLSPLKWRLGRIVA--VYPGSDGVNRVADICTS 168
           T  RTN   +     V+ ++  L+P+    GRI+A  ++ GS+     AD+ T+
Sbjct: 323 TDHRTNVPHIYAVGDVLYRKPELTPVAIHAGRIIARRLFGGSEERMDYADVATT 376


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 216 LSRVRRSQPGRRHLYLKRSHQEVF 145
           L+R +RSQP R+    K  H+  F
Sbjct: 301 LTRNKRSQPARKRKSSKTDHRHPF 324


>AY341146-1|AAR13710.1|  164|Anopheles gambiae aminopeptidase N
           protein.
          Length = 164

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 536 RPLTPLSSDPDDMMPLTPGHFL 471
           R +T LSSDP  + P++ G  L
Sbjct: 137 RLITKLSSDPSIISPISRGQLL 158


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,089
Number of Sequences: 2352
Number of extensions: 17712
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)