Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f17
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    71   9e-13
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    71   9e-13
AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical ...    67   1e-11
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
 Frame = -1

Query: 731  SLPDALIEEGINFHLCPPYSPHFGGLWEAGVKSIKFHMHRVLGNCNLTYEELITVLTQIE 552
            +L   L  + I F    P +P  GG++E  V  +K  + + +G   L +  L  VL+  E
Sbjct: 1892 TLTSFLATKDIEFRHITPLAPWQGGIYERLVGLVKAQIIKAIGKNILDFHSLRYVLSGAE 1951

Query: 551  AILNSRPLTPLSSDPDDMMPLTPGHFLIGQPLTAMPAAEYK-DCRLSNL---TR--FQRL 390
            A++NSRPLTP  + PDDM+ + P  FL    L  +P    + D   SN    TR    +L
Sbjct: 1952 AMINSRPLTPNPNSPDDMIAIRPQDFLNPGVLLEVPKNSIRFDPTRSNTEQRTRDHLNKL 2011

Query: 389  ELMRQHFWARWSKEYISELQQRTKWRTNQSSL--KLHSLVVVKED 261
            E +    W  WS  Y+S L++        S+L  K+  +V++  D
Sbjct: 2012 EGVLNELWKLWSLRYLSTLRELKHKNKKCSTLLPKIGQVVLIVTD 2056


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
 Frame = -1

Query: 731  SLPDALIEEGINFHLCPPYSPHFGGLWEAGVKSIKFHMHRVLGNCNLTYEELITVLTQIE 552
            +L   L  + I F    P +P  GG++E  V  +K  + + +G   L +  L  VL+  E
Sbjct: 1892 TLTSFLATKDIEFRHITPLAPWQGGIYERLVGLVKAQIIKAIGKNILDFHSLRYVLSGAE 1951

Query: 551  AILNSRPLTPLSSDPDDMMPLTPGHFLIGQPLTAMPAAEYK-DCRLSNL---TR--FQRL 390
            A++NSRPLTP  + PDDM+ + P  FL    L  +P    + D   SN    TR    +L
Sbjct: 1952 AMINSRPLTPNPNSPDDMIAIRPQDFLNPGVLLEVPKNSIRFDPTRSNTEQRTRDHLNKL 2011

Query: 389  ELMRQHFWARWSKEYISELQQRTKWRTNQSSL--KLHSLVVVKED 261
            E +    W  WS  Y+S L++        S+L  K+  +V++  D
Sbjct: 2012 EGVLNELWKLWSLRYLSTLRELKHKNKKCSTLLPKIGQVVLIVTD 2056


>AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical
           protein Y20F4.8 protein.
          Length = 345

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
 Frame = -1

Query: 641 VKSIKFHMHRVLGNCNLTYEELITVLTQIEAILNSRPLTPLSSDPDDMMPLTPGHFLIGQ 462
           V  IK  +++VLG   +T  EL T++ + E I+NSRP+TP   DPDD   + P  F+   
Sbjct: 32  VALIKNVLYKVLGKQVVTILELETLVIETEGIINSRPITPNKKDPDDAPAIRPADFISYN 91

Query: 461 PLTAMPA------AEYKDCRLSNLTR--FQRLELMRQHFWARWSKEYISELQ--QRTKWR 312
                P          +      LTR   ++L ++++  W  +SK YI+ L+  +  K  
Sbjct: 92  AQLTRPEHHKSIFEAIQGGESGKLTRQLMEKLRIIKEQLWKEFSKSYIAALRDVEHHKKA 151

Query: 311 TNQSSLKLHSLVVVKEDNLSPLKWRLGRIVAV-YPGSDGVNRVADICTSSGVIKRFFNKI 135
           T++   ++  +V+V +  L    W + RIV +     DG  +   +     ++++  N +
Sbjct: 152 TSRLKPEIGQVVLVFQKLLPRYAWPMARIVELNRKNPDGEVQSVMVKMGKRIVEKPVNLL 211

Query: 134 CPL 126
            PL
Sbjct: 212 IPL 214


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
 Frame = -1

Query: 413  NLTRFQRLELMR------QHFWARWSKEYISELQQRTKWRTNQS-----SLKLHSLVVVK 267
            NLT+ + +E ++      +  W  W+K Y+SEL++  K R +       S  +  +V++ 
Sbjct: 1031 NLTKQETIEALQSSVAIIEDIWKIWNKTYLSELRETHKLRMDNKREINDSPFVGQVVLIC 1090

Query: 266  EDNLSPLKWRLGRIVAVYPGSDGVNRVADICTSSG-VIKRFFNKICPL 126
            + NL    W++G+I    P +DG+ R A + T++G  I+R  N I PL
Sbjct: 1091 DPNLPRNNWKMGKITETKPSTDGILREAHLLTATGRTIRRPINLITPL 1138


>Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical
           protein F54G8.2 protein.
          Length = 812

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 498 DAAYSWAFSHWPAP-YCNACC 439
           D ++ W   H+  P YCNACC
Sbjct: 263 DGSHVWRLRHFTKPTYCNACC 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,281
Number of Sequences: 27780
Number of extensions: 392915
Number of successful extensions: 870
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)