Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f15
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.078
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    27   2.2  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   6.8  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    26   6.8  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   6.8  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    25   9.0  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   9.0  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 713 NWNCKFVHYYDCILYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 567
           NW C  +  +   ++     FR+ Y + NI   K   +YS  ++ +Q +
Sbjct: 188 NWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 300 RLWKNGNTLISLKGGAAVVTIL 235
           RLWK+G  LI+L G  + VT +
Sbjct: 89  RLWKDGELLITLNGHKSAVTTM 110


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 149 GCEIVHPSKL*KKNVFTYII--HKS*MYVGTYIIKLFSINI 33
           G E+  P K+ K+N+FT II   K  + + T  IK F  N+
Sbjct: 13  GLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNL 53


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 149 GCEIVHPSKL*KKNVFTYII--HKS*MYVGTYIIKLFSINI 33
           G E+  P K+ K+N+FT II   K  + + T  IK F  N+
Sbjct: 33  GLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNL 73


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 149 GCEIVHPSKL*KKNVFTYII--HKS*MYVGTYIIKLFSINI 33
           G E+  P K+ K+N+FT II   K  + + T  IK F  N+
Sbjct: 13  GLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLDNL 53


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 647 QDYTIKNINKDKQYLIYSQFDNRRQEQKFDNK*YACVCAS 528
           ++ +I  I KD++Y +Y Q D +    K  +K  A   AS
Sbjct: 208 ENVSISVIGKDEKYTLYDQNDTKEWLDKLGDKGPAAARAS 247


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 149 GCEIVHPSKL*KKNVFTYII--HKS*MYVGTYIIKLFSINI 33
           G E+  P K+ K+N+FT I+   K  + + T  IK F  N+
Sbjct: 13  GLELCKPEKVNKQNLFTNIVKPQKDKINIKTDKIKFFLNNL 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,870
Number of Sequences: 5004
Number of extensions: 69289
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)