Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f15
         (766 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ236549-1|CAB43010.1|  107|Homo sapiens anti-HCV E2 antibody, V...    33   1.1  
AF194411-1|AAL40181.1|  119|Homo sapiens immunoglobulin kappa li...    31   6.0  
AJ408547-1|CAC27674.1|   92|Homo sapiens immunoglobulin kappa ch...    30   7.9  

>AJ236549-1|CAB43010.1|  107|Homo sapiens anti-HCV E2 antibody, VK
           segment protein.
          Length = 107

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 277 PNKFEGRGSRCNYTETLELISQGGWRIYVVDVYGLQ*PLNTRWAVRSSTRLSYK 116
           P++F G GS  ++T T+  +    + +Y   +YG     N+RW     T++  K
Sbjct: 59  PDRFSGSGSGTDFTLTISRLEPEDFAVYYCQLYG-----NSRWTFGQGTKVEIK 107


>AF194411-1|AAL40181.1|  119|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 119

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 277 PNKFEGRGSRCNYTETLELISQGGWRIYVVDVYGLQ*PL 161
           P++F G GS  N+T T+  +    + +Y    YG   PL
Sbjct: 66  PDRFSGSGSGTNFTLTISRLEPEDFAVYYCQQYGRSPPL 104


>AJ408547-1|CAC27674.1|   92|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 92

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 277 PNKFEGRGSRCNYTETLELISQGGWRIYVVDVYG 176
           P+KF G GS  ++T T+  +   G+ +Y    YG
Sbjct: 49  PDKFSGSGSGTDFTLTISRLEPEGFAVYYCQRYG 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,157,036
Number of Sequences: 237096
Number of extensions: 2251947
Number of successful extensions: 3535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3534
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)