Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f15
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AC024843-10|AAF60845.2|  526|Caenorhabditis elegans Hypothetical...    28   8.4  

>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 692 HYYDCILYFYNHKFRQDYTIKNINKDKQ 609
           H +D ILYFYN K  +D T   + K  Q
Sbjct: 492 HIWDVILYFYNLKTGRDTTDAPVRKLSQ 519


>AC024843-10|AAF60845.2|  526|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.1 protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 103 NTFFFYSLDGWTISQPTWCLVVTGAHR 183
           +TF  Y+L  +T SQ TW    TG  R
Sbjct: 341 STFILYTLSHFTYSQATWLSFATGLLR 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,605
Number of Sequences: 27780
Number of extensions: 386934
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)