Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f14
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 55 1e-08
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 45 2e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 42 8e-05
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 42 1e-04
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 41 3e-04
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 38 0.002
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 38 0.002
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 0.002
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 37 0.004
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 35 0.017
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 34 0.022
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 33 0.067
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 32 0.088
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 32 0.12
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 30 0.47
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 29 1.1
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 29 1.1
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 28 1.9
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 27 3.3
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 4.4
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 26 5.8
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 26 5.8
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 26 5.8
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 26 5.8
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 5.8
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 5.8
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 26 7.6
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 7.6
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Frame = -3
Query: 826 RLQARENAARGA--EGTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYAS 653
RLQ + +A A +G + F + + EG RGLY+G++PN +KV P+V+ISY+VYE
Sbjct: 362 RLQTQGTSAHPATYDGFI-DCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCK 420
Query: 652 RSLGV 638
+ LG+
Sbjct: 421 KWLGL 425
Score = 33.9 bits (74), Expect = 0.029
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -3
Query: 751 REGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLGVNMT*SGCGPCLWLTTVRGHADD 572
R GIR + G N +KV+P SI + YE R LG++ + P L+ G A
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRVLGISSSSENHSP-LYSYLAGGMAGS 240
Query: 571 TSQ 563
+Q
Sbjct: 241 VAQ 243
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 766 REIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRS 647
+E+ + GIRG YRG+ + + P + +E R+
Sbjct: 276 KELYKSVGIRGYYRGVLVGILGMFPYSATDLGTFEGLKRT 315
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 44.8 bits (101), Expect = 2e-05
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = -3
Query: 787 GTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLGVN 635
GT+ + R I EGI GLYRG+ P + +P+ SI +VVYE GVN
Sbjct: 53 GTLSSM-RTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLFGVN 102
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 772 VFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
+ R+I + EG R Y G+ NFI+ IPA S++++ +E + L
Sbjct: 328 LIRDIWRSEGWRKYYSGMATNFIRTIPASSVTFLSFEIVRKWL 370
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 769 FREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEY 659
FR+I + EG+ YRG+ P+ + V I + +YEY
Sbjct: 237 FRKIYKYEGLAAFYRGLFPSLFGTL-HVGIQFPLYEY 272
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 42.3 bits (95), Expect = 8e-05
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = -3
Query: 781 MRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLGVN 635
++ V + + G+RG + G+T +IKVIP VS S+ VY ++ LG++
Sbjct: 278 LKQVVQTTYKEAGMRGFFVGLTIGYIKVIPMVSTSFFVYNHSKALLGID 326
Score = 33.5 bits (73), Expect = 0.038
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -3
Query: 820 QARENAARGAEGTMRGVFR---EIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASR 650
Q + RG + G+++ I G+ GLY+G T +V P I +V YE R
Sbjct: 46 QTNHASYRGYAYSRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFPYAGIKFVAYEQVRR 105
Query: 649 SL 644
L
Sbjct: 106 VL 107
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -3
Query: 760 IVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
I + EGI G +RG + N +K+IP +SI++ YE S+ L
Sbjct: 276 IYKTEGINGFFRGYSSNMLKIIPVMSITWYTYETVSKML 314
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 760 IVQREG-IRGLYRGITPNFIKVIPAVSISYVVYEYASRSLGVN 635
IVQ EG LY G+ + V+P VSI + +E+ + N
Sbjct: 179 IVQHEGGYPALYNGLPATLLNVVPYVSICFFTFEFCKQKFFSN 221
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 40.7 bits (91), Expect = 3e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -3
Query: 784 TMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
T+R F+ V+ EG++GLYRG+T I + S+S+ VY+
Sbjct: 52 TIRSCFQNAVKNEGLKGLYRGLTLPLISATLSRSVSFTVYD 92
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = -3
Query: 787 GTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
G + G++ +I + EG+R L+RG+ P+ ++PA ++ ++ YE
Sbjct: 84 GPVSGLY-QIARHEGVRSLWRGLVPSLTMLLPANTVQFLGYE 124
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 772 VFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
+ + + EG R L+RG+ PN I IPA SI++ Y R L
Sbjct: 109 ILKNVKVHEGTRALFRGLGPNLIGTIPARSINFFSYGNGKRIL 151
Score = 33.1 bits (72), Expect = 0.050
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 769 FREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLG 641
F+ + +GI GLY G+T + ++V+P I + YE +G
Sbjct: 319 FKLVWMEQGIVGLYGGLTAHLLRVVPNACILFGSYEVIMHFIG 361
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = -3
Query: 757 VQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLGV 638
++ EG RGLY+G++ + + V + ++ +V+YE ++ +
Sbjct: 213 IRLEGFRGLYKGLSASLLGVGES-TLQWVLYEKFKHAVAI 251
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 760 IVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
I + G+RG YRG P ++ PA ++++ VYE S+ +
Sbjct: 261 IYTKAGLRGFYRGFVPVLVRAAPANAVTFYVYETVSQHI 299
Score = 29.1 bits (62), Expect = 0.82
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -3
Query: 826 RLQARENAARGAEGTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASR 650
RLQ++ N + + V ++I + EG+ Y+G + + VSI + +EY R
Sbjct: 44 RLQSQSNVSPIYNNALDCV-KKISKNEGLAAFYKGTVLPLLGIGFCVSIQFTTFEYCKR 101
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = -3
Query: 823 LQARENAARGAEGTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
++ R R ++ + + + +GI G Y+G P+ ++V+P I+++VYE
Sbjct: 210 IRTRLQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHLLRVVPQTCITFLVYE 263
Score = 29.9 bits (64), Expect = 0.47
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 769 FREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
F ++++ EG+RG Y G P+ + V ++ ++ YE
Sbjct: 140 FYDLIKNEGLRGCYAGFAPSLLGVSQG-ALQFMAYE 174
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 34.7 bits (76), Expect = 0.017
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 769 FREIVQREGI-RGLYRGITPNFIKVIPAVSISYVVYEYASRSLGVN 635
+ I+ EG+ GLY G+ P I +PA ++ + YEY R L N
Sbjct: 59 YSTILCEEGVFHGLYSGVCPMLIGSLPATALFFSSYEYTKRHLMSN 104
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 781 MRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLGVN 635
+R V + + EG+ GL+RG P S+ +V YE R N
Sbjct: 284 IRHVLGGLYKSEGLLGLFRGFGPRIFWTSSQSSLMFVFYEGIIRLFNKN 332
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -3
Query: 811 ENAARGAEGTMRG---VFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
++A +G E G V+R+ + +G+RGLYRG P+ + ++ + + +Y+
Sbjct: 165 KSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYD 217
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -3
Query: 769 FREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSLG 641
F+ EG+ L+RG T N ++ P ++++ + + G
Sbjct: 78 FKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMFG 120
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 32.7 bits (71), Expect = 0.067
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -3
Query: 790 EGTMRGVFREIVQREGIRGLYRG 722
+ ++R VF+E VQ+EG+R L+RG
Sbjct: 48 QSSLRPVFKETVQKEGVRALWRG 70
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 784 TMRGVFREIVQREGIRGLYRGITPNFIKVIP 692
+ + F I + GI+GLYRG++ + +KV P
Sbjct: 229 SFKDCFLSIYRNSGIKGLYRGLSVSMLKVAP 259
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 32.3 bits (70), Expect = 0.088
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 754 QREGIRGLYRGITPNFIKVIPAVSISYVVYEYA 656
Q G + LYRG++ + +P+ S + VYEYA
Sbjct: 43 QAGGFQHLYRGLSSVLVSTLPSASSFFFVYEYA 75
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 799 RGAEGTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
R +G++ V R I GI ++GI P + +PA ++S+ YE
Sbjct: 244 RKCKGSL-DVVRFIYNYGGIPSFFKGIRPRMVVAMPATAVSWAAYE 288
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 826 RLQARENAARGAEGTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEY 659
R+Q +R G + +I EG+ L+RGI+ + P+ +I + V E+
Sbjct: 46 RMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHAIYFSVLEF 101
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 766 REIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
R IV GIRGLYRG+ + + + Y +SL
Sbjct: 151 RIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSL 191
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 787 GTMRGVFREIVQREGIRGLYRGITPNFI 704
G + G F+ I+ +EG+RGLY G P I
Sbjct: 60 GNIAG-FKTILSKEGLRGLYTGGMPTLI 86
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 784 TMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
T+ R+I ++EGI G +RG ++ P + YE + ++L
Sbjct: 143 TIYSSIRDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYELSKQNL 189
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 811 ENAARGAE--GTMRGVFREIVQREGIRGLYRGI 719
+ AA G E GT R VF ++ + +GIRG+ RG+
Sbjct: 135 KQAATGQEVKGTFR-VFADLYKEKGIRGINRGV 166
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = -3
Query: 784 TMRGVFREIVQREGIRGLYRGITPNFI 704
+++ + E+ ++EG RGL++G T +F+
Sbjct: 155 SIKSIISELWEKEGARGLWKGHTISFL 181
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 790 EGTMRGVFREIVQREGIRGLYRGITPNFIKVIPAVSISYVVYEYASRSL 644
+G++ + + EG++G YRG +P +V YE + + L
Sbjct: 116 KGSVINTISTLARSEGLKGFYRGYWMGVAIYLPTTVSWWVCYEESKKYL 164
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 326 RGKYEMALKIMKINASLFAMDLSVRPRP-VNYWLQRSRFLSSFVP*LSCVICLLIYFVIV 150
R + L I+ +FA+D + ++ W+ +RF S ++ +CLL+ ++
Sbjct: 102 RSNFRWPLLIIWSIIIVFAVDKKFEVQKFLSIWINENRFYSEIWVPIAIYVCLLVLMLLS 161
Query: 149 MFHF 138
+ F
Sbjct: 162 LIFF 165
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 326 RGKYEMALKIMKINASLFAMDLSVRPRP-VNYWLQRSRFLSSFVP*LSCVICLLIYFVIV 150
R + L I+ +FA+D + ++ W+ +RF S ++ +CLL+ ++
Sbjct: 102 RSNFRWPLLIIWSIIIVFAVDKKFEVQKFLSIWINENRFYSEIWVPIAIYVCLLVLMLLS 161
Query: 149 MFHF 138
+ F
Sbjct: 162 LIFF 165
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 326 RGKYEMALKIMKINASLFAMDLSVRPRP-VNYWLQRSRFLSSFVP*LSCVICLLIYFVIV 150
R + L I+ +FA+D + ++ W+ +RF S ++ +CLL+ ++
Sbjct: 102 RSNFRWPLLIIWSIIIVFAVDKKFEVQKFLSIWINENRFYSEIWVPIAIYVCLLVLMLLS 161
Query: 149 MFHF 138
+ F
Sbjct: 162 LIFF 165
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 326 RGKYEMALKIMKINASLFAMDLSVRPRP-VNYWLQRSRFLSSFVP*LSCVICLLIYFVIV 150
R + L I+ +FA+D + ++ W+ +RF S ++ +CLL+ ++
Sbjct: 102 RSNFRWPLLIIWSIIIVFAVDKKFEVQKFLSIWINENRFYSEIWVPIAIYVCLLVLMLLS 161
Query: 149 MFHF 138
+ F
Sbjct: 162 LIFF 165
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 326 RGKYEMALKIMKINASLFAMDLSVRPRP-VNYWLQRSRFLSSFVP*LSCVICLLIYFVIV 150
R + L I+ +FA+D + ++ W+ +RF S ++ +CLL+ ++
Sbjct: 102 RSNFRWPLLIIWSIIIVFAVDKKFEVQKFLSIWINENRFYSEIWVPIAIYVCLLVLMLLS 161
Query: 149 MFHF 138
+ F
Sbjct: 162 LIFF 165
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 272 RTNLHLFS*FSTPFR-TFHGVTYNVFTTTNQK 364
RT LH STP R T G+ V TTNQ+
Sbjct: 917 RTQLHAKRDVSTPLRSTESGIVDQVMVTTNQE 948
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 757 VQREGIRGLYRGITPNFIKVIPAVSISYVVYE 662
V+ G G+YRG+ + P S+ + YE
Sbjct: 117 VKNGGFHGVYRGLGSILVGSAPGASLFFTTYE 148
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Frame = -2
Query: 242 VNYWL-----QRSRFL--SSFVP*LSCVICLLIYFVIV 150
+NYWL Q RF +S P S +I LLI+F++V
Sbjct: 2154 INYWLAVPYGQAWRFFWNTSNTPLWSIIILLLIFFIVV 2191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,710
Number of Sequences: 5004
Number of extensions: 62444
Number of successful extensions: 206
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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