Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f12
(234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 88 2e-19
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 81 2e-17
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 26 0.58
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 1.8
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 1.8
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 24 3.1
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 3.1
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 23 4.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 4.1
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 5.4
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 23 5.4
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 5.4
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 23 7.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 22 9.4
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 22 9.4
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 22 9.4
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 22 9.4
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 22 9.4
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 87.8 bits (208), Expect = 2e-19
Identities = 42/62 (67%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Frame = -2
Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 9
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 8 LP 3
LP
Sbjct: 61 LP 62
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 81.0 bits (191), Expect = 2e-17
Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = -2
Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 9
MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 8 LP 3
LP
Sbjct: 61 LP 62
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 0.58
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 125 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLP 3
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVP 243
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 202 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 77
N ST + + ++K+F R +TP ++K R +L+ S F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 102 VLLYFDRFGVFPPRLN*KVFDIFD 173
VLLY RF V P+L +F FD
Sbjct: 98 VLLYGPRFSVLSPKLYGGIFITFD 121
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 78 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 188
N+ + R L +F VF L+ FD+ D+ +HV
Sbjct: 14 NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 170 KDIKDFLIKARRKDAKSVKIKKNPEN 93
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 179 REIKDIKDFLIKARRKD 129
R IKD+KD KA KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 13 CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 105
C+ F + ++ TR++ +L +TL T SGF
Sbjct: 988 CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020
>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 64 NLEHRTLNLTFSGFFFILT 120
N E T++ TFSGF+ LT
Sbjct: 25 NEEGETVDFTFSGFYANLT 43
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 86 FKVRCSRFLYTLVITDKEKAEKLK 15
FK+ F +LV+TD +K K+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 40 SVMTRVYRNLEHRTLNLTFSGFFFILTD 123
S+M + N+ H+T L GF LT+
Sbjct: 253 SLMLALLSNVVHKTTGLVIGGFTLNLTN 280
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 40 SVMTRVYRNLEHRTLNLTFSGFFFIL 117
S+ + +Y R NL +GFFF+L
Sbjct: 344 SLCSGLYMKKTGRYRNLVIAGFFFML 369
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 40 SVMTRVYRNLEHRTLNLTFSGF 105
++ TR++ +L +TL T SGF
Sbjct: 975 TLRTRIWASLRSQTLYRTVSGF 996
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 176 EIKDIKDFLIKARRKDAKSVKIKKNPE 96
EIK + L KA ++K+KK PE
Sbjct: 106 EIKALDIVLFKAITSKGDTLKVKKIPE 132
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 191 FNMPREIKDIKDFLIKARRKDAKS 120
+ R++KD D + K RKD KS
Sbjct: 423 YEKSRKLKDYIDDIRKGYRKDLKS 446
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 140 RRKDAKSVKIKKNPENVKFKV 78
+RK+ KS NP N+K K+
Sbjct: 20 KRKEEKSHNPNGNPRNLKAKI 40
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 159 FDIFDFTRHVEDE*FSTSTVK 221
FDI D T E+E + TS VK
Sbjct: 357 FDIHDETGKSEEEEYFTSVVK 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,839
Number of Sequences: 5004
Number of extensions: 14252
Number of successful extensions: 46
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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