Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f12
         (234 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     92   5e-20
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     91   2e-19
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    89   6e-19
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   2.8  
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    25   6.5  
07_01_0578 + 4295386-4296489,4297394-4297507                           25   8.6  
05_05_0149 - 22733703-22736216                                         25   8.6  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 41/61 (67%), Positives = 53/61 (86%)
 Frame = -2

Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 6
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 5   P 3
           P
Sbjct: 61  P 61


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 40/61 (65%), Positives = 52/61 (85%)
 Frame = -2

Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 6
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 5   P 3
           P
Sbjct: 61  P 61


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 39/60 (65%), Positives = 51/60 (85%)
 Frame = -2

Query: 182 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 3
           P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -2

Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 24
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 42
           ++  +I+A +     V I   P  VK    C++F Y +V+T
Sbjct: 55  LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95


>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 149 IKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 24
           IKAR++   S + K +PE         +  Y  +I+D + AE
Sbjct: 352 IKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAE 393


>05_05_0149 - 22733703-22736216
          Length = 837

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 164 IKDFLIKARRKDAKSVKIKKN---PENVKFKVRCSRFLYTLVITDKEKAE 24
           +KD  I + R+   S++ K N   PENV      S+   T V  DKE AE
Sbjct: 534 MKDEEIHSLRRMLSSLQRKMNAPAPENVDKSEETSKISTTPVTEDKEIAE 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,595,211
Number of Sequences: 37544
Number of extensions: 82973
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)