Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f12
         (234 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.     113   9e-26
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...   113   9e-26
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    60   2e-09
Y15233-1|CAA75517.1|  847|Homo sapiens liver glycogen phosphoryl...    28   4.6  
M36807-1|AAA35906.1|  366|Homo sapiens protein ( Human liver gly...    28   4.6  
M14636-1|AAA52577.1|  847|Homo sapiens PYGL protein.                   28   4.6  
BC110791-1|AAI10792.2|  847|Homo sapiens phosphorylase, glycogen...    28   4.6  
BC095850-1|AAH95850.2|  847|Homo sapiens phosphorylase, glycogen...    28   4.6  
BC082229-1|AAH82229.2|  847|Homo sapiens phosphorylase, glycogen...    28   4.6  
BC009895-1|AAH09895.3|  846|Homo sapiens phosphorylase, glycogen...    28   4.6  
AF066858-1|AAC17450.1|  847|Homo sapiens liver glycogen phosphor...    28   4.6  
AF046798-1|AAC18079.1|  847|Homo sapiens glycogen phosphorylase ...    28   4.6  
AF046785-1|AAC23504.1|  847|Homo sapiens liver glycogen phosphor...    28   4.6  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score =  113 bits (272), Expect = 9e-26
 Identities = 53/61 (86%), Positives = 59/61 (96%)
 Frame = -2

Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 6
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 5   P 3
           P
Sbjct: 61  P 61


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score =  113 bits (272), Expect = 9e-26
 Identities = 53/61 (86%), Positives = 59/61 (96%)
 Frame = -2

Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 6
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 5   P 3
           P
Sbjct: 61  P 61


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
          protein.
          Length = 37

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = -2

Query: 86 FKVRCSRFLYTLVITDKEKAEKLKQSLP 3
          FKVRCSR+LYTLVITDKEKAEKLKQSLP
Sbjct: 1  FKVRCSRYLYTLVITDKEKAEKLKQSLP 28


>Y15233-1|CAA75517.1|  847|Homo sapiens liver glycogen phosphorylase
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>M36807-1|AAA35906.1|  366|Homo sapiens protein ( Human liver
           glycogen phosphorylase type IV mRNA, 3' end. ).
          Length = 366

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 258 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 294


>M14636-1|AAA52577.1|  847|Homo sapiens PYGL protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC110791-1|AAI10792.2|  847|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC095850-1|AAH95850.2|  847|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC082229-1|AAH82229.2|  847|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC009895-1|AAH09895.3|  846|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 738 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 774


>AF066858-1|AAC17450.1|  847|Homo sapiens liver glycogen
           phosphorylase protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>AF046798-1|AAC18079.1|  847|Homo sapiens glycogen phosphorylase
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>AF046785-1|AAC23504.1|  847|Homo sapiens liver glycogen
           phosphorylase protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 134
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,089,618
Number of Sequences: 237096
Number of extensions: 453875
Number of successful extensions: 1027
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 76,859,062
effective HSP length: 56
effective length of database: 63,581,686
effective search space used: 1335215406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)