Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f12
(234 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 108 5e-25
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 0.33
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 2.4
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 2.4
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 25 5.4
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 25 5.4
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 25 5.4
AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical... 25 7.2
Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical pr... 25 9.5
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 25 9.5
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 108 bits (260), Expect = 5e-25
Identities = 49/61 (80%), Positives = 56/61 (91%)
Frame = -2
Query: 185 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 6
MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 5 P 3
P
Sbjct: 61 P 61
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 136 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 20
G+ NR++ T+ S+S+ A S P+SS+T R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 155 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 45
F K+R+ + K K++KN ENV+ R + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 194 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 51
+++MP IK ++FL+ + K K +K+ K + K C + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 191 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 84
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 191 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 84
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 191 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 84
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182
>AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical
protein R52.1 protein.
Length = 326
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 191 FNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRC 72
F MP I+ ++FLI+ K K +K+ K + K C
Sbjct: 225 FTMPLPIQKCEEFLIEKSEKSVKEKLKLVKKYQLKSLKTHC 265
>Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical
protein T22C1.10b protein.
Length = 1291
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 105 LLYFDRFGVFPP 140
+LYFDRF +F P
Sbjct: 164 MLYFDRFSIFEP 175
>Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical
protein T22C1.10a protein.
Length = 1307
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 105 LLYFDRFGVFPP 140
+LYFDRF +F P
Sbjct: 180 MLYFDRFSIFEP 191
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 176 EIKDIKDFLIKARRKDAKSVKIKKNPEN 93
E KD ++ D S KIKK+PEN
Sbjct: 732 EDDSFKDTSNRSDNTDGSSKKIKKSPEN 759
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,949,557
Number of Sequences: 27780
Number of extensions: 77725
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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