Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f11
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0771 + 20463872-20465113                                         29   4.2  
01_01_0970 + 7664552-7664570,7664696-7664733,7665661-7666510,766...    29   4.2  
04_03_0722 - 19014505-19014600,19014705-19014853,19015321-19015327     28   9.8  

>10_08_0771 + 20463872-20465113
          Length = 413

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 693 VPCILPGSRCLLHTAHDRSRRDVHLLTRHR 782
           V C++P + C L  AHD  RR +   TR R
Sbjct: 10  VLCLIPPTMCSLAAAHDDLRRGLEQATRGR 39


>01_01_0970 +
           7664552-7664570,7664696-7664733,7665661-7666510,
           7666608-7666699
          Length = 332

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 758 ITPRTVVSGMEKATASREDTRDAVEELLEEQHAVRLGLPALNTTQGD 618
           + PR V SG+ KA  +R    D  +    E   V  GLP L   + D
Sbjct: 250 LAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWD 296


>04_03_0722 - 19014505-19014600,19014705-19014853,19015321-19015327
          Length = 83

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 8   KRIEISFFYVHWVLHADSF---HKKRKIENEYYNLMKLRLV*AYFG 136
           KRI +SFFY+ ++L+ + +   H+KR+ +   Y L    L    FG
Sbjct: 19  KRIFLSFFYLLFLLNENDYILIHEKRRQQKNMYLLNWTTLAAGNFG 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,361
Number of Sequences: 37544
Number of extensions: 272371
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)