Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f09
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.87 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.87 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   4.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   8.1  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    20   8.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   8.1  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    20   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 48  PHPRLQRSPCRLLRNPSRGQPGP 116
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254



 Score = 21.4 bits (43), Expect = 3.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
 Frame = +3

Query: 30  LSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTL-----------PPPYPHRR 161
           LS+L  P   +  SP   + +PS     P+ L+  L           PPP+PH +
Sbjct: 690 LSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQ 744


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 48  PHPRLQRSPCRLLRNPSRGQPGP 116
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146



 Score = 21.4 bits (43), Expect = 3.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
 Frame = +3

Query: 30  LSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTL-----------PPPYPHRR 161
           LS+L  P   +  SP   + +PS     P+ L+  L           PPP+PH +
Sbjct: 582 LSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQ 636


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 383  PSKPSVLSNSSTGVQPVSRSVSTTSHP 303
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +3

Query: 57  RLQRSPCRLLRNPSRGQPGPHGLRRTLP-PPYP 152
           RL     + L NP   +P P  + R  P PP P
Sbjct: 238 RLTDEQLKELENPPTPKPRPTKVSRRKPRPPRP 270


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +3

Query: 3   SAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHR 158
           ++P K ++ L T     P        +  +  R +  P     +  PPYP+R
Sbjct: 440 NSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRTSPQLSPMSSLPPYPNR 491


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 131 SPKPVRTWLPSRRITKKSAWTPLKA 57
           S K V+ W  +RR+  K    P  A
Sbjct: 157 SEKQVKIWFQNRRVKYKKEDLPAAA 181


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 92  ITKKSAWTPLKARVREPK 39
           ITK   W   K  +RE K
Sbjct: 212 ITKLEQWNHSKVHIREDK 229


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 201 FDLMYAKRAFVHWY 160
           F   + KRA+V WY
Sbjct: 194 FQEPWGKRAYVTWY 207


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 341 QPVSRSVSTTSHPPW 297
           QP+  SV    HP W
Sbjct: 67  QPLHPSVPRLGHPQW 81


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 19  YFIGLVLFGSLTLAFSGVHADFFVI 93
           YFI + LFGS+ +    +   +++I
Sbjct: 175 YFIIIQLFGSMKIVKGTLKTAYYLI 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,275
Number of Sequences: 336
Number of extensions: 2001
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)