Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f09
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   211   3e-56
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   207   6e-55
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    78   5e-16
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    28   0.49 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.64 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   2.0  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   3.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   6.0  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    24   7.9  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    24   7.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   7.9  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  211 bits (516), Expect = 3e-56
 Identities = 93/114 (81%), Positives = 105/114 (92%)
 Frame = -1

Query: 408 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 229
           +DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP  VPG  +AKV RAVCMLSNTT+IA
Sbjct: 330 RDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIA 389

Query: 228 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 67
           EAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 390 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  207 bits (505), Expect = 6e-55
 Identities = 92/114 (80%), Positives = 103/114 (90%)
 Frame = -1

Query: 408 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 229
           +DV AA+ TIK KRTIQFVDWCPTGFK+GI  +PP  + G ++AKV RAVCMLSNTT+IA
Sbjct: 326 RDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIA 385

Query: 228 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 67
           EAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 386 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 78.2 bits (184), Expect = 5e-16
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
 Frame = -1

Query: 408 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 229
           K+V+  I +++TK +  FV+W P      +   PP      DL   + +   + N+T+I 
Sbjct: 324 KEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQ 375

Query: 228 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 70
           E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +  + Y+E G+D
Sbjct: 376 EIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 221 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 48
           G+   TS TS T S       S++     S+P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 47  EPKSTK 30
           EP+ TK
Sbjct: 208 EPRFTK 213


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 395 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 291
           RP++P  P  LS     V PV+  V +   PP  P
Sbjct: 562 RPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 389 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 303
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 392 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 297
           P  PS+P+++SN ST  G+Q V   V   +   W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 258  CMLSNTTAIAEAWARLDHKFDLMY 187
            C++      +  W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 42  RLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPY 149
           ++ H  LQ  P    +NP+   PG      TLPP Y
Sbjct: 411 QMKHLSLQEEP---KQNPTPAAPGAFPNSNTLPPRY 443


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 218 LALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 108
           +AL   +   T S L+ +  SV++W   S  K +R W
Sbjct: 105 IALNKKNQFATGSELTRSLASVQLWDVRSEQKLIRQW 141


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 408 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 265
           KDVN  +       TI   +W PTG ++   Y     V   D   VQR
Sbjct: 157 KDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GNVQR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,921
Number of Sequences: 5004
Number of extensions: 31010
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)