Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f09
         (408 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsi...    26   0.46 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   1.9  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   2.5  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    23   3.2  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   4.3  
AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative apyrase/n...    23   4.3  
AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5' nucleo...    23   4.3  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   5.7  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    23   5.7  
Z22930-3|CAA80515.1|  275|Anopheles gambiae trypsin protein.           22   7.5  
AY331404-1|AAQ97585.1|  100|Anopheles gambiae agCP14332 protein.       22   7.5  
AY331408-1|AAQ97589.1|  100|Anopheles gambiae agCP14332 protein.       22   9.9  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    22   9.9  

>AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsive
           serine proteaselike protein protein.
          Length = 600

 Score = 26.2 bits (55), Expect = 0.46
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 224 LGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 117
           L +  TTS+TS T +  + T T+       ++P PV
Sbjct: 138 LSMGATTSTTSTTATTTTTTTTTTTTTTTTTTPNPV 173


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 99  RGQPGPHGLRRTLPPPYP 152
           RG+PGP G    L PP P
Sbjct: 627 RGEPGPKGEPGLLGPPGP 644



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 102 GQPGPHGLR 128
           GQPGP GLR
Sbjct: 486 GQPGPEGLR 494


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 143 RRESSPKPVRTWLPSRRITKKSAWTPLKARV 51
           R   S K V+ W  +RR+ +K    P  A +
Sbjct: 232 RLRLSEKQVKIWFQNRRVKRKKGDAPFGAEL 262


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
            protein I protein.
          Length = 1340

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 303  TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 169
            T +   D+AKV+ AV + +    ++   A +++ +DL  A  A +
Sbjct: 991  TALLENDIAKVKHAVVIQNGMNYLSNQLAFINNPYDLSIATYAMM 1035


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
           G+G  E E   A EDL   +K  EE
Sbjct: 781 GKGHRERELKSAEEDLKRSKKKSEE 805


>AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative
           apyrase/nucleotidase protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 177 AFVHWYVGEGMEEGEFSEA 121
           AFV +YVG G  E E++ A
Sbjct: 387 AFVDYYVGRGEAEHEWTYA 405


>AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5'
           nucleotidase protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 177 AFVHWYVGEGMEEGEFSEA 121
           AFV +YVG G  E E++ A
Sbjct: 387 AFVDYYVGRGEAEHEWTYA 405


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 191 MRSNLWSRRAQASAMAVVLDNM 256
           MR+N WS   +A   A+ L  M
Sbjct: 55  MRTNRWSSHPEAPGKAIYLTRM 76


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 VVDTDLETGWTPVDELDSTLGFDGSDGRV 399
           +VD  + + W P  ELD   GF G +  V
Sbjct: 350 IVDFCVGSLWGPKSELDVARGFVGYNATV 378


>Z22930-3|CAA80515.1|  275|Anopheles gambiae trypsin protein.
          Length = 275

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 403 CERGHRYHQNQAYYPIRRLV 344
           C + H  HQ +  YP+ R +
Sbjct: 18  CAQAHASHQRRVPYPLPRFL 37


>AY331404-1|AAQ97585.1|  100|Anopheles gambiae agCP14332 protein.
          Length = 100

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 215 ALTTSSTSCTPSVLSCTGTSVRVWRRE 135
           A T    +   SV+ C GT+   W R+
Sbjct: 72  AQTDDDDAAAASVMWCKGTNTEEWGRK 98


>AY331408-1|AAQ97589.1|  100|Anopheles gambiae agCP14332 protein.
          Length = 100

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 215 ALTTSSTSCTPSVLSCTGTSVRVWRRE 135
           A T        SV+ C GT+   W R+
Sbjct: 72  AQTDDDDEAAASVMWCKGTNTEEWGRK 98


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 97  LEGSQVLTGFGELSLLHTLTDVPVHESTLGVHEVELV 207
           L+  ++ T   EL   H +TD P H+ T      E V
Sbjct: 365 LDPEKLNTIIDELFPSHPVTDWPTHQPTTSQENPESV 401


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,168
Number of Sequences: 2352
Number of extensions: 8279
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32922351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)