Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f07
         (869 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BT30 Cluster: Alkylated DNA repair protein alkB homol...   119   8e-26
UniRef50_Q9VTP1 Cluster: CG14130-PA; n=4; Diptera|Rep: CG14130-P...   116   8e-25
UniRef50_Q7YWP5 Cluster: Putative uncharacterized protein; n=2; ...   111   3e-23
UniRef50_UPI00006A12B9 Cluster: spermatogenesis associated 11; n...   106   6e-22
UniRef50_UPI0000E4938C Cluster: PREDICTED: similar to AlkB, alky...    95   2e-18
UniRef50_UPI00005A3D82 Cluster: PREDICTED: similar to spermatoge...    81   5e-14
UniRef50_Q4Q7Z1 Cluster: Putative uncharacterized protein; n=5; ...    48   2e-04
UniRef50_Q9D6Z0-2 Cluster: Isoform 2 of Q9D6Z0 ; n=3; Eutheria|R...    44   0.007
UniRef50_Q5KJN7 Cluster: Putative uncharacterized protein; n=1; ...    40   0.082
UniRef50_Q8IRX3 Cluster: CG14798-PB, isoform B; n=2; Drosophila ...    36   1.0  
UniRef50_Q1DU02 Cluster: Predicted protein; n=1; Coccidioides im...    33   9.4  

>UniRef50_Q9BT30 Cluster: Alkylated DNA repair protein alkB homolog
           7 precursor; n=11; Eumetazoa|Rep: Alkylated DNA repair
           protein alkB homolog 7 precursor - Homo sapiens (Human)
          Length = 221

 Score =  119 bits (287), Expect = 8e-26
 Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
 Frame = -2

Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFTTDT--LPHVHVLDLAAAGFIK 695
           RYE+DHWD AI GFRETE+S++   ++ IL RV A AF      L  VHVLDL A G+IK
Sbjct: 60  RYEYDHWDAAIHGFRETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIK 119

Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAV 515
           PH+D+++FCG  IAG+ L S +VMR                   LY+++G ARY+F+H +
Sbjct: 120 PHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEI 179

Query: 514 LGGERS 497
           L  E S
Sbjct: 180 LRDEES 185


>UniRef50_Q9VTP1 Cluster: CG14130-PA; n=4; Diptera|Rep: CG14130-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 255

 Score =  116 bits (279), Expect = 8e-25
 Identities = 49/83 (59%), Positives = 65/83 (78%)
 Frame = -2

Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFTTDTLPHVHVLDLAAAGFIKPH 689
           RYEFDHWDDAI GFRETER ++ P+N+ IL+RV  +AF    +P+VH+LDLA  G IKPH
Sbjct: 77  RYEFDHWDDAIHGFRETERKKWFPKNREILERVRQVAFDGAVMPYVHILDLAPDGVIKPH 136

Query: 688 IDAVRFCGDVIAGVCLCSSAVMR 620
           +D+ R+CG+ I+G+ L S +VMR
Sbjct: 137 VDSTRYCGNTISGISLLSDSVMR 159


>UniRef50_Q7YWP5 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 227

 Score =  111 bits (266), Expect = 3e-23
 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
 Frame = -2

Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAF--TTDTLPHVHVLDLAAAGFIK 695
           RYE  HWDDAI  +RE E+ +++ EN  ++ R+ + +F   T+ L +VH+LDL   G IK
Sbjct: 59  RYEKSHWDDAIHLYREREQRKWRDENLEVISRIRSESFGANTEHLTYVHILDLHKDGVIK 118

Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMR-XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHA 518
           PHIDA+R+CGDVI GV L S A+MR                    LY + G  RY+FTH 
Sbjct: 119 PHIDAIRYCGDVITGVSLLSDAIMRLRHKDQKDELIMDLLMPRRSLYRLGGPGRYDFTHE 178

Query: 517 VLGGERSQW 491
           VLG + S W
Sbjct: 179 VLGEQESVW 187


>UniRef50_UPI00006A12B9 Cluster: spermatogenesis associated 11; n=3;
           Coelomata|Rep: spermatogenesis associated 11 - Xenopus
           tropicalis
          Length = 139

 Score =  106 bits (255), Expect = 6e-22
 Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
 Frame = -2

Query: 841 AIQGFRETERSQFKPENQVILDRVXALAFTT--DTLPHVHVLDLAAAGFIKPHIDAVRFC 668
           AI GFRETER Q+ PEN  +L RV   AF    + L  VHVLDL   G+IK H+D+V+FC
Sbjct: 1   AIHGFRETERLQWSPENSAVLQRVREKAFPPGEEQLSLVHVLDLKKEGYIKAHVDSVKFC 60

Query: 667 GDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERS 497
           G  IAG+CL SS++MR                   LYV+ G  RY FTH +L  E S
Sbjct: 61  GSTIAGICLLSSSIMRLVSVDNSEERADLLLPRRCLYVLSGKVRYNFTHEILRDEES 117


>UniRef50_UPI0000E4938C Cluster: PREDICTED: similar to AlkB,
           alkylation repair homolog 7 (E. coli), partial; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           AlkB, alkylation repair homolog 7 (E. coli), partial -
           Strongylocentrotus purpuratus
          Length = 203

 Score = 95.1 bits (226), Expect = 2e-18
 Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
 Frame = -2

Query: 841 AIQGFRETERSQFKPENQVILDRVXALAFTTDT--LPHVHVLDLAAAGFIKPHIDAVRFC 668
           AI GFRETE+S++   N  I+ R+   AF   +  L  VHVLDLA  G+IKPH+D+++FC
Sbjct: 57  AIHGFRETEKSRWSEVNSPIIQRIRDQAFPEGSAQLTLVHVLDLAQNGYIKPHVDSIKFC 116

Query: 667 GDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVLGGERS 497
           G  IAG+ L S AVMR                   LY+M+   RY++TH VL  E S
Sbjct: 117 GSTIAGLSLLSPAVMRLVHEENSNQWVNALLSPRSLYIMRDKIRYDYTHEVLKEEES 173


>UniRef50_UPI00005A3D82 Cluster: PREDICTED: similar to
           spermatogenesis associated 11 isoform 3; n=1; Canis
           lupus familiaris|Rep: PREDICTED: similar to
           spermatogenesis associated 11 isoform 3 - Canis
           familiaris
          Length = 131

 Score = 80.6 bits (190), Expect = 5e-14
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
 Frame = -2

Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFT--TDTLPHVHVLDLAAAGFIK 695
           RYE+DHWD AI GFRETE+S++   ++ IL RV A AF+     L  VHVLDL   G+IK
Sbjct: 60  RYEYDHWDAAIHGFRETEKSRWSEASRAILQRVQAAAFSPGQTLLSSVHVLDLEPRGYIK 119

Query: 694 PHIDAVRFCG 665
           PH+D+++  G
Sbjct: 120 PHVDSIKGLG 129


>UniRef50_Q4Q7Z1 Cluster: Putative uncharacterized protein; n=5;
           Trypanosomatidae|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 286

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 37/73 (50%)
 Frame = -2

Query: 733 VHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYV 554
           VH L LA +GFI+ H+D  R    ++AG+CL +  VM                    LY+
Sbjct: 154 VHFLRLAGSGFIRAHVDESRNSTGIVAGLCLNAGRVMTLTHPAYPGERVELMLAPRCLYI 213

Query: 553 MKGVARYEFTHAV 515
           + G ARY++ H+V
Sbjct: 214 LIGRARYDWAHSV 226


>UniRef50_Q9D6Z0-2 Cluster: Isoform 2 of Q9D6Z0 ; n=3; Eutheria|Rep:
           Isoform 2 of Q9D6Z0 - Mus musculus (Mouse)
          Length = 163

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = -2

Query: 691 HIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAVL 512
           H DA  FCG  IAG+ L S +VM+                   LY+++G ARY+F+H +L
Sbjct: 65  HWDA--FCGSTIAGLSLLSPSVMKLVHTQEPEQWLELLLEPGSLYILRGSARYDFSHEIL 122

Query: 511 GGERS 497
             E S
Sbjct: 123 RDEES 127


>UniRef50_Q5KJN7 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 287

 Score = 39.9 bits (89), Expect = 0.082
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
 Frame = -2

Query: 865 YEFDHWDDAIQGFRETERSQFKPENQVILD----RVXALAFTT-DTLPH----------- 734
           +E  H+D  I G+RE+  S   P    +L     R+ +L F++   LPH           
Sbjct: 106 FEEGHYDSVIHGYRESLLSTLPPSPHPLLAPTLRRIYSLFFSSLPALPHSTTHTETPLPP 165

Query: 733 ----VHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMR 620
                H+L L+  G I PH+D +   G VI GV L +   +R
Sbjct: 166 AGTLTHILHLSPTGAILPHVDNLEASGRVILGVSLGAERTLR 207


>UniRef50_Q8IRX3 Cluster: CG14798-PB, isoform B; n=2; Drosophila
           melanogaster|Rep: CG14798-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 237

 Score = 36.3 bits (80), Expect = 1.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 816 NAASSSQRTKSYWTAXKR*PSQPTHYRTCTSWTWPPLGS*SRILTLSD 673
           NA S   +T+  W   +  PS      +CTSWTW  L   SR  T  D
Sbjct: 87  NAESGLPKTRPRWITSREFPSVSRSCPSCTSWTWLTLARSSRTWTTLD 134


>UniRef50_Q1DU02 Cluster: Predicted protein; n=1; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 221

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 691 HIDA---VRFCGDVIAGVCLCSSAVMR 620
           H+DA   VR CG  +AG CLCS+  +R
Sbjct: 181 HLDAFLGVRLCGSAMAGCCLCSAGTVR 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,725,867
Number of Sequences: 1657284
Number of extensions: 11049698
Number of successful extensions: 25597
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25569
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)