Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f07
(869 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004393-1|AAH04393.1| 221|Homo sapiens alkB, alkylation repair... 119 1e-26
AY427650-1|AAR24624.1| 221|Homo sapiens spermatogenesis cell pr... 119 1e-26
AY358858-1|AAQ89217.1| 221|Homo sapiens AGTG6002 protein. 119 1e-26
AK223336-1|BAD97056.1| 221|Homo sapiens spermatogenesis associa... 116 8e-26
X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for ... 31 7.2
M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein. 31 7.2
J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein. 31 7.2
BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein. 31 7.2
>BC004393-1|AAH04393.1| 221|Homo sapiens alkB, alkylation repair
homolog 7 (E. coli) protein.
Length = 221
Score = 119 bits (287), Expect = 1e-26
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Frame = -2
Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFTTDT--LPHVHVLDLAAAGFIK 695
RYE+DHWD AI GFRETE+S++ ++ IL RV A AF L VHVLDL A G+IK
Sbjct: 60 RYEYDHWDAAIHGFRETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIK 119
Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAV 515
PH+D+++FCG IAG+ L S +VMR LY+++G ARY+F+H +
Sbjct: 120 PHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEI 179
Query: 514 LGGERS 497
L E S
Sbjct: 180 LRDEES 185
>AY427650-1|AAR24624.1| 221|Homo sapiens spermatogenesis cell
proliferation related protein protein.
Length = 221
Score = 119 bits (287), Expect = 1e-26
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Frame = -2
Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFTTDT--LPHVHVLDLAAAGFIK 695
RYE+DHWD AI GFRETE+S++ ++ IL RV A AF L VHVLDL A G+IK
Sbjct: 60 RYEYDHWDAAIHGFRETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIK 119
Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAV 515
PH+D+++FCG IAG+ L S +VMR LY+++G ARY+F+H +
Sbjct: 120 PHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEI 179
Query: 514 LGGERS 497
L E S
Sbjct: 180 LRDEES 185
>AY358858-1|AAQ89217.1| 221|Homo sapiens AGTG6002 protein.
Length = 221
Score = 119 bits (287), Expect = 1e-26
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Frame = -2
Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFTTDT--LPHVHVLDLAAAGFIK 695
RYE+DHWD AI GFRETE+S++ ++ IL RV A AF L VHVLDL A G+IK
Sbjct: 60 RYEYDHWDAAIHGFRETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIK 119
Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAV 515
PH+D+++FCG IAG+ L S +VMR LY+++G ARY+F+H +
Sbjct: 120 PHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEI 179
Query: 514 LGGERS 497
L E S
Sbjct: 180 LRDEES 185
>AK223336-1|BAD97056.1| 221|Homo sapiens spermatogenesis associated
11 variant protein.
Length = 221
Score = 116 bits (280), Expect = 8e-26
Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Frame = -2
Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAFTTDT--LPHVHVLDLAAAGFIK 695
RYE+DHWD AI GFRETE+S++ ++ I RV A AF L VHVLDL A G+IK
Sbjct: 60 RYEYDHWDAAIHGFRETEKSRWSEASRAIPQRVQAAAFGPGQTLLSSVHVLDLEARGYIK 119
Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMRXXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHAV 515
PH+D+++FCG IAG+ L S +VMR LY+++G ARY+F+H +
Sbjct: 120 PHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEI 179
Query: 514 LGGERS 497
L E S
Sbjct: 180 LRDEES 185
>X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for
integrin beta-5 subunit. ).
Length = 799
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 778 DRVXALAFTTDTLPHVHVLDLAAAGFIKPH 689
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein.
Length = 796
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 778 DRVXALAFTTDTLPHVHVLDLAAAGFIKPH 689
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein.
Length = 799
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 778 DRVXALAFTTDTLPHVHVLDLAAAGFIKPH 689
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein.
Length = 799
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 778 DRVXALAFTTDTLPHVHVLDLAAAGFIKPH 689
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,452,407
Number of Sequences: 237096
Number of extensions: 1758001
Number of successful extensions: 2905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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