Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f07
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical...   111   8e-25
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical
           protein Y46G5A.35 protein.
          Length = 227

 Score =  111 bits (266), Expect = 8e-25
 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
 Frame = -2

Query: 868 RYEFDHWDDAIQGFRETERSQFKPENQVILDRVXALAF--TTDTLPHVHVLDLAAAGFIK 695
           RYE  HWDDAI  +RE E+ +++ EN  ++ R+ + +F   T+ L +VH+LDL   G IK
Sbjct: 59  RYEKSHWDDAIHLYREREQRKWRDENLEVISRIRSESFGANTEHLTYVHILDLHKDGVIK 118

Query: 694 PHIDAVRFCGDVIAGVCLCSSAVMR-XXXXXXXXXXXXXXXXXXXLYVMKGVARYEFTHA 518
           PHIDA+R+CGDVI GV L S A+MR                    LY + G  RY+FTH 
Sbjct: 119 PHIDAIRYCGDVITGVSLLSDAIMRLRHKDQKDELIMDLLMPRRSLYRLGGPGRYDFTHE 178

Query: 517 VLGGERSQW 491
           VLG + S W
Sbjct: 179 VLGEQESVW 187


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 624 MTALEHRHTPAITSPQNRTASICGFMNPAAARSKTCTCGSVSVVKANAXTRSS 782
           ++AL  +  P+ T PQ+RT  I G  +P         C SVS   + + + SS
Sbjct: 267 LSALLSQRRPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVSSSASFSPSHSS 319


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 16  NNILVYK*QHISITDNCAENPKDLGSFVANLHFLSLGSPGS 138
           ++IL Y  ++ +++  C  N  +L SF+ N HFL L    S
Sbjct: 32  SHILEYFQKNSNLSPKCEINVNNLLSFIENRHFLDLEQKNS 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,628
Number of Sequences: 27780
Number of extensions: 264670
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)