Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f06
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 75 9e-14
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 64 1e-10
12_02_0911 + 24236374-24237582 34 0.12
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 32 0.62
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.4
05_05_0221 - 23385626-23386702 29 3.3
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 3.3
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.3
09_02_0549 + 10485415-10486107 29 4.4
01_06_1162 + 35010414-35011106 29 5.8
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 28 7.7
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 28 7.7
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 74.5 bits (175), Expect = 9e-14
Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Frame = -2
Query: 744 YLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYR 574
Y ++ AYF D V GFAK F +++ EER+HA KL+ Y MRG +L VT L +
Sbjct: 109 YHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFD 168
Query: 573 APANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQ 394
P A+E AL LE V + + + S ND L D++ EFL+EQ +
Sbjct: 169 HPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAI 224
Query: 393 RDLAGKASTLKKMMDKHAALGEFIFDKKLL 304
+ ++ + L+++ H G + FD+KLL
Sbjct: 225 KKISEYVAQLRRVGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 64.5 bits (150), Expect = 1e-10
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Frame = -2
Query: 744 YLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYR 574
Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L VT L +
Sbjct: 141 YHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFD 200
Query: 573 APANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQ 394
P E G AL L + V C ND L D++ EFL+EQ +
Sbjct: 201 HP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFLEEQVEAI 250
Query: 393 RDLAGKASTLKKMMDKHAALGEFIFDKKLL 304
+ ++ + L+++ H G + FD+KLL
Sbjct: 251 KKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>12_02_0911 + 24236374-24237582
Length = 402
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -2
Query: 609 LTGSVTDLITYRAPANTSW--ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHL 442
L VT+L+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 441 VDYLSGEFLDEQYKGQRDL 385
D+LS +EQY G L
Sbjct: 208 DDFLSDACSNEQYSGDSSL 226
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 771 RRKWPRQSQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 622
+R + R + A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 104 KRHFKRAGKSKALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 528 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 358
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>05_05_0221 - 23385626-23386702
Length = 358
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 766 EVAASIPVLSHGGLLLDRYGEPPRLREAILRCCD 665
E AA + L HG L +G L ILRCCD
Sbjct: 35 ESAAVLEALLHGASLPPAHGGAHALAAEILRCCD 68
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 495 SIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM-DKHAALGEFIF 319
S++++ K C ++D + + +S E L+E TLK +M +K A+ G F+
Sbjct: 1356 SVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTFLL 1415
Query: 318 DKKL 307
++++
Sbjct: 1416 NEEI 1419
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 546 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 439
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>09_02_0549 + 10485415-10486107
Length = 230
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 595 NRPHHVQGPRKHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVRG 422
NR +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQ 156
Query: 421 IPRRTVQGPTRP 386
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>01_06_1162 + 35010414-35011106
Length = 230
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 595 NRPHHVQGPRKHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVRG 422
NR +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQ 156
Query: 421 IPRRTVQGPTRP 386
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 448 PPGRLFVRGIPRRTVQGPTRPRRQG-LDPQEDDGQTRRPRRVHL 320
PPG VR P++ Q P PRR+ P R P R HL
Sbjct: 118 PPGFAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHL 161
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 616 GKADRLRNRPHHVQGPRKHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 461
G + + ++P ++Q P +H P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,831,403
Number of Sequences: 37544
Number of extensions: 444858
Number of successful extensions: 1239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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