Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f06
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 86 2e-17
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 68 7e-12
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 36 0.034
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 36 0.034
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 30 2.3
L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 28 9.1
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 9.1
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 86.2 bits (204), Expect = 2e-17
Identities = 53/145 (36%), Positives = 77/145 (53%)
Frame = -2
Query: 744 YLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPA 565
YL+M YF D V P AK F + + EEREHAT+L+ +RG G V L + P
Sbjct: 30 YLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG---GRVV-LQDIQKPE 85
Query: 564 NTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 385
N W + A E AL LE S+ ++ T + ND HL D++ ++LDEQ K +
Sbjct: 86 NDEWGTALKAFEAALALEKFNNESLLKLHSTA-GNHNDAHLTDFIEEKYLDEQVKSINEF 144
Query: 384 AGKASTLKKMMDKHAALGEFIFDKK 310
A + LK++ +GE++FDK+
Sbjct: 145 ARMVANLKRV---GPGVGEYVFDKE 166
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 68.1 bits (159), Expect = 7e-12
Identities = 46/145 (31%), Positives = 72/145 (49%)
Frame = -2
Query: 744 YLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPA 565
YL+M A+F D + AK F + + EER HAT+L+ +RG G V + + P
Sbjct: 30 YLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG---GRVA-MQNIQKPE 85
Query: 564 NTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 385
W + A E AL LE S+ ++ E ND HL +Y+ ++L+EQ +
Sbjct: 86 KDEWGTVLEAFEAALALERANNASLLKLHGIAEQR-NDAHLTNYIQEKYLEEQVHSINEF 144
Query: 384 AGKASTLKKMMDKHAALGEFIFDKK 310
A + +K+ LGE++FDK+
Sbjct: 145 ARHIANIKR---AGPGLGEYLFDKE 166
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 538 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 362
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2008
Query: 361 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 251
R P L Q ++ + ++ H+ + P
Sbjct: 2009 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2046
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 538 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 362
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2030
Query: 361 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 251
R P L Q ++ + ++ H+ + P
Sbjct: 2031 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2068
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 538 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 362
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 792 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 851
Query: 361 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 251
R P L Q ++ + ++ H+ + P
Sbjct: 852 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 889
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 538 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 362
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 770 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 829
Query: 361 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 251
R P L Q ++ + ++ H+ + P
Sbjct: 830 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 867
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 538 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 362
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2008
Query: 361 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 251
R P L Q ++ + ++ H+ + P
Sbjct: 2009 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2046
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 35.9 bits (79), Expect = 0.034
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 538 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 362
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2030
Query: 361 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 251
R P L Q ++ + ++ H+ + P
Sbjct: 2031 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2068
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = -3
Query: 779 TDPGGSG-RVNPST*PWGLTSRSIR*TAPASRSYSSMLRLKNASTRPSS-LTTCS*GES* 606
T+P S +PST P +TS ++ ++ +S + ++ ++ ST PSS +TT + S
Sbjct: 442 TEPSTSTVTTSPSTSP--VTS-TVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPST 498
Query: 605 QAP*PTSSRTGPPQTRRGRAAHQPSSTPSS 516
P+SS + P T + SST SS
Sbjct: 499 STTGPSSSSSTPSSTASSSVSSTASSTQSS 528
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = -3
Query: 779 TDPGGSG-RVNPST*PWGLTSRSIR*TAPASRSYSSMLRLKNASTRPSS-LTTCS*GES* 606
T+P S +PST P +TS ++ ++ +S + ++ ++ ST PSS +TT + S
Sbjct: 442 TEPSTSTVTTSPSTSP--VTS-TVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPST 498
Query: 605 QAP*PTSSRTGPPQTRRGRAAHQPSSTPSS 516
P+SS + P T + SST SS
Sbjct: 499 STTGPSSSSSTPSSTASSSVSSTASSTQSS 528
>L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical
protein F10E9.2 protein.
Length = 286
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 442 GRLFVRGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRV 326
G L G R ++G TR R+G + G+TRR ++V
Sbjct: 110 GELSNNGAERGKIRGSTRATRKGSVNKSKSGRTRRHKKV 148
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 28.3 bits (60), Expect = 6.9
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 5/176 (2%)
Frame = -1
Query: 742 LSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGK-ADRLRNRPHHVQGPR 566
LSHG L Y ++ +I D + A +P G+ A+++ P P
Sbjct: 75 LSHGAKKL--YTTDGKIVNSIKELEDGKIYVAASAQFIPMRYGEFAEKVWKPPSRKHSP- 131
Query: 565 KHVVGERRI-SPRARPQAGE*RHQ-QHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 392
++ RI + R R Q R Q Q+ G +QR R R P
Sbjct: 132 --IMSSDRIKTARTRSQDPSKRRQPQNSGSSAPTGSGVQRSRSVRTLAEDRKSRRDANPA 189
Query: 391 RPRRQGLD--PQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLRSNPF*NVTSK 230
RP G P++ DG RP+ RQ P+ ++I T P V+ K
Sbjct: 190 RPNVNGASNAPKKFDG--ARPKAPPARQTIPKPKKILTTSTTNKKPPTPKRKVSKK 243
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 28.3 bits (60), Expect = 6.9
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 5/176 (2%)
Frame = -1
Query: 742 LSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGK-ADRLRNRPHHVQGPR 566
LSHG L Y ++ +I D + A +P G+ A+++ P P
Sbjct: 75 LSHGAKKL--YTTDGKIVNSIKELEDGKIYVAASAQFIPMRYGEFAEKVWKPPSRKHSP- 131
Query: 565 KHVVGERRI-SPRARPQAGE*RHQ-QHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 392
++ RI + R R Q R Q Q+ G +QR R R P
Sbjct: 132 --IMSSDRIKTARTRSQDPSKRRQPQNSGSSAPTGSGVQRSRSVRTLAEDRKSRRDANPA 189
Query: 391 RPRRQGLD--PQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLRSNPF*NVTSK 230
RP G P++ DG RP+ RQ P+ ++I T P V+ K
Sbjct: 190 RPNVNGASNAPKKFDG--ARPKAPPARQTIPKPKKILTTSTTNKKPPTPKRKVSKK 243
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 577 VRDEVGYGA---CQLSPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPHG*VL 747
V+D+V GA ++ H Q+ GR++ SI+E +++ G + + + P G +
Sbjct: 265 VKDDVNVGADTVLRMRAHNQLC---GRLIGKAGSSIKEIMQKTGTNITVTKYIEPPGGIS 321
Query: 748 GLT 756
GLT
Sbjct: 322 GLT 324
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 577 VRDEVGYGA---CQLSPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPHG*VL 747
V+D+V GA ++ H Q+ GR++ SI+E +++ G + + + P G +
Sbjct: 389 VKDDVNVGADTVLRMRAHNQLC---GRLIGKAGSSIKEIMQKTGTNITVTKYIEPPGGIS 445
Query: 748 GLT 756
GLT
Sbjct: 446 GLT 448
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 427 RGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLR 260
R PRRT + P+ PRR+ + PRR R +P R PP +
Sbjct: 105 RSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAK 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,391
Number of Sequences: 27780
Number of extensions: 381027
Number of successful extensions: 1053
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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