Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f04
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0112 - 12986547-12988502                                         30   2.4  
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875...    30   2.4  
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631...    29   3.2  
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884...    29   5.6  

>10_07_0112 - 12986547-12988502
          Length = 651

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 550 DELIAHLVSCGYRSPIYNVNAATHF 624
           D  +AH++  G  S ++ VNAATHF
Sbjct: 145 DAALAHVLRLGLDSDVFVVNAATHF 169


>04_03_0963 +
           21285160-21285579,21286585-21286635,21287017-21287502,
           21287866-21287961
          Length = 350

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 341 NTCTPRERHLHTHTALVLRKHKGPVVRSEAS 249
           N C PR+R   T  A VL KH+  VV S  S
Sbjct: 276 NMCLPRQRASFTTVAFVLEKHQIDVVTSTIS 306


>03_06_0500 -
           34361139-34362006,34362295-34362818,34362908-34363125,
           34363259-34363406
          Length = 585

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 679 GGAAVINIVRPKN*YLISQSGWRHLRYR*DSGNHMTP 569
           G AAV+          +  +GWRH RYR   G+ +TP
Sbjct: 218 GAAAVVLAAVMAASLAVFLAGWRHYRYRVPEGSPLTP 254


>03_02_0490 -
           8840577-8840914,8841009-8841067,8841168-8841283,
           8841578-8841640,8841826-8842038,8842211-8842330,
           8842453-8842578,8842593-8842749,8842830-8842962,
           8843054-8843138,8843305-8843421
          Length = 508

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 570 GVMWLPESYL*RKCRHPL*DMRYQFLGLTI 659
           G+ W P+ +    CRHP+ +M   FL  ++
Sbjct: 131 GMYWHPQCFRCSSCRHPIREMEVTFLQFSL 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,155
Number of Sequences: 37544
Number of extensions: 264699
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)