Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f04
         (790 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    27   0.87 
X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein...    23   8.1  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    23   8.1  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 0.87
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 614 PPTLRYEISVLRSHYIYNSCPTLQT 688
           PPT+ ++ SVL  H++ +S  +L T
Sbjct: 388 PPTIAFDPSVLLDHHLLDSSESLNT 412


>X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein
           Agm1 protein.
          Length = 498

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 259 RKPPKNWVSEFK 224
           R PP NWVS F+
Sbjct: 157 RVPPSNWVSVFR 168


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 597 DRTPVTT*HQVGYELVHPSKQGS 529
           D+ P +  H  G  LVHPSK G+
Sbjct: 18  DKAPRSL-HGPGLSLVHPSKAGA 39


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,670
Number of Sequences: 2352
Number of extensions: 9156
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)