Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f04
         (790 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145643-1|AAD38618.1|  898|Drosophila melanogaster BcDNA.GH0762...    56   4e-08
AE014134-552|AAF51148.1| 2438|Drosophila melanogaster CG3523-PA ...    56   4e-08
AY122087-1|AAM52599.1| 1529|Drosophila melanogaster GH02912p pro...    54   2e-07
AE014134-551|AAF51149.1| 2409|Drosophila melanogaster CG3524-PA ...    54   2e-07
AY102675-1|AAM27504.1|  741|Drosophila melanogaster LD12605p pro...    29   5.5  
AE014297-2547|AAF55570.1| 1194|Drosophila melanogaster CG14304-P...    29   7.2  

>AF145643-1|AAD38618.1|  898|Drosophila melanogaster BcDNA.GH07626
           protein.
          Length = 898

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 295 KAVCVCRWRSRGVQVLVSRTDSSTXXXXXXXXXXXXXXXXXXXXFNLAAVLRDAFLDKQT 474
           + + + RW+ RGV+V++  +D +T                    FNLAAVLRDA ++ QT
Sbjct: 312 QGLMIRRWQERGVKVVIDTSDVTTAAGAKKLLENSNKLALVGGIFNLAAVLRDALIEDQT 371

Query: 475 PADFQTVAKPKI 510
             DF+TVA PK+
Sbjct: 372 AKDFKTVADPKV 383


>AE014134-552|AAF51148.1| 2438|Drosophila melanogaster CG3523-PA
            protein.
          Length = 2438

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +1

Query: 295  KAVCVCRWRSRGVQVLVSRTDSSTXXXXXXXXXXXXXXXXXXXXFNLAAVLRDAFLDKQT 474
            + + + RW+ RGV+V++  +D +T                    FNLAAVLRDA ++ QT
Sbjct: 1852 QGLMIRRWQERGVKVVIDTSDVTTAAGAKKLLENSNKLALVGGIFNLAAVLRDALIEDQT 1911

Query: 475  PADFQTVAKPKI 510
              DF+TVA PK+
Sbjct: 1912 AKDFKTVADPKV 1923


>AY122087-1|AAM52599.1| 1529|Drosophila melanogaster GH02912p protein.
          Length = 1529

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +1

Query: 295  KAVCVCRWRSRGVQVLVSRTDSSTXXXXXXXXXXXXXXXXXXXXFNLAAVLRDAFLDKQT 474
            +A+ + RW  RGVQV +   D +T                    FNLAAVLRD  ++ Q+
Sbjct: 951  QALMIRRWHDRGVQVQIDTNDVTTAVGCQRLLEVSNKLALVGGIFNLAAVLRDGLIEDQS 1010

Query: 475  PADFQTVAKPKIDGQLH 525
            P +F+ V+ PK+   +H
Sbjct: 1011 PKNFEKVSAPKLLATIH 1027


>AE014134-551|AAF51149.1| 2409|Drosophila melanogaster CG3524-PA
            protein.
          Length = 2409

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +1

Query: 295  KAVCVCRWRSRGVQVLVSRTDSSTXXXXXXXXXXXXXXXXXXXXFNLAAVLRDAFLDKQT 474
            +A+ + RW  RGVQV +   D +T                    FNLAAVLRD  ++ Q+
Sbjct: 1831 QALMIRRWHDRGVQVQIDTNDVTTAVGCQRLLEVSNKLALVGGIFNLAAVLRDGLIEDQS 1890

Query: 475  PADFQTVAKPKIDGQLH 525
            P +F+ V+ PK+   +H
Sbjct: 1891 PKNFEKVSAPKLLATIH 1907


>AY102675-1|AAM27504.1|  741|Drosophila melanogaster LD12605p
           protein.
          Length = 741

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/67 (23%), Positives = 24/67 (35%)
 Frame = +1

Query: 307 VCRWRSRGVQVLVSRTDSSTXXXXXXXXXXXXXXXXXXXXFNLAAVLRDAFLDKQTPADF 486
           +  W++ G +V +S  D ++                    FNLA VL+D     Q    F
Sbjct: 151 IALWKTYGCEVAISTADITSKKGCAQLLSEANGMGPVGGIFNLAVVLKDCIFSNQNVNQF 210

Query: 487 QTVAKPK 507
                PK
Sbjct: 211 LECFAPK 217


>AE014297-2547|AAF55570.1| 1194|Drosophila melanogaster CG14304-PA
           protein.
          Length = 1194

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +2

Query: 578 VVTGVLSIT*MPPPTLRYEISVLRSHYIYNSCPTLQTETHYCFAAEIXGVVVSTREASQD 757
           V T    I   P P +  EIS  R   +YN  PTL+    + + A    + V+T      
Sbjct: 712 VTTTAPHIEHQPAPQMHPEISTPRPPILYNQQPTLRLRPVHTYKATRRPIYVTT---PAP 768

Query: 758 VLTPNSCH 781
            ++P S H
Sbjct: 769 AVSPTSSH 776


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,630,205
Number of Sequences: 53049
Number of extensions: 431296
Number of successful extensions: 1244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)