Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f04
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    38   0.011
Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical pr...    30   2.2  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +1

Query: 295  KAVCVCRWRSRGVQVLVSRTDSSTXXXXXXXXXXXXXXXXXXXXFNLAAVLRDAFLDKQT 474
            +A CV  WR  GV VLVS  + +                     F+LA VLRD   + Q 
Sbjct: 1990 QARCVHFWRRTGVSVLVSTLNIAKKSDAVELINQCTAMGPIGGIFHLAMVLRDCLFENQN 2049

Query: 475  PADFQTVAKPKIDGQLH 525
              +F+  A+ K  G ++
Sbjct: 2050 VQNFKDAAEAKYYGTIN 2066


>Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.4 protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 466 KQTPADFQTVAKPKIDGQLHDRPLFRWVD-ELIAHLVSCGYRSPIYNVNAATHFE 627
           K+   +++    PK+D    D  L+ +   ++  +L  CG +  I NV++  H+E
Sbjct: 142 KREECEYRIENNPKLDVSCEDNNLYTYTYLQVTGNLRDCGCQGTIRNVSSPEHYE 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,347
Number of Sequences: 27780
Number of extensions: 205681
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)