Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f03
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.33 
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    28   1.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   4.1  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   5.5  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   5.5  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    26   5.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.5  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   7.2  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   9.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   9.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   9.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +3

Query: 369 SSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTSDSLFSSPTYCSSLISPTSTFS 533
           SSL +++    SL    +L S  +      SPTS SL SS    SSL S ++T S
Sbjct: 73  SSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSS 127



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 348 PLTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTSDSLFSS--PTYCSSLISPT 521
           PLT++  ++  + +  P++  +  +  S  S      + T+ +  SS  P+Y +S + PT
Sbjct: 358 PLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPT 417

Query: 522 STFSP*PKAS 551
           S+ S  P +S
Sbjct: 418 SSVSSTPLSS 427



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 348 PLTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTSDSLFSS--PTYCSSLISPT 521
           PLT++  ++  + +  P++  +  +  S  S      + T+ +  SS  P+Y +S + PT
Sbjct: 472 PLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPT 531

Query: 522 STFSP*PKAS 551
           S+ S  P +S
Sbjct: 532 SSVSSTPLSS 541


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 766 QAIDHVLLNTTNDKNKDSCIALRVKKIEKFPTYD 665
           ++ID+  +N   DKNKDS +  R    E  PT D
Sbjct: 434 KSIDYPEMNVIKDKNKDSTV--RASNNENIPTPD 465


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 348 PLTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PV-M*SPTSDSLFSSPTYCSSLISPTS 524
           PL TIP S   + A         G+  ++ SR    + SPTS    + P Y     +P+S
Sbjct: 459 PLATIPESDSESMASDLAGESSYGSRAALSSRSQSNLLSPTSTGASNQPNYSPFADNPSS 518

Query: 525 TFSP*PKAS 551
           +    P++S
Sbjct: 519 SNVSIPRSS 527


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 197 RISYQSHLCRFFILFYLVFKPNFERLNR*NINNFIVNCKLSS-HFFEANILSINNNTYEL 373
           R S + H  + + L        +E+L    ++    + +L++  FF+AN L IN + ++ 
Sbjct: 559 RSSGKEHYQKAWALLQTSRAKVWEKLGLSTVDVSTTDVRLTNFEFFDANNLDINWDDWDA 618

Query: 374 IAKHC 388
           I +HC
Sbjct: 619 IFQHC 623


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 358 VVNGQNVCLKEMTAQFAINNKVVDILPIQTFKV 260
           ++N +N  LK +     + +K VD LPIQ+FK+
Sbjct: 545 MLNAENSALKAL-----LEDKKVDCLPIQSFKI 572


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 769 QQAIDHVLLNTTNDKNKDSCIALRVKKIEKFPTYDGGEIHKDVALIYTEKYNNTVVSKIK 590
           Q A+D+ ++    +KN+ S   +R K IE     D  E  K    +Y ++ NN + SK +
Sbjct: 34  QSALDYFMMALKYEKNEKSKEIIRSKVIEYL---DRAEKLK----VYLQEKNNQISSKSR 86

Query: 589 LGN 581
           + N
Sbjct: 87  VSN 89


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 34  LIHQNNLSNQSEDNQTITNAEETDKGVGIGNIVRQILFQRLSFYEETCLALLALQDKL 207
           +I +  L    + N T   AEE ++ +  G+I R  L +   F  E+CL L    DKL
Sbjct: 96  MIVETQLIGLFQSNYTSV-AEELEQSIRTGDIRRLYLNRSDKFCGESCLILRPEFDKL 152


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 19  KRMEFLIHQNNLSNQSEDNQTITNAEETDKGVGIGNIVRQILFQRLSFYEE 171
           KR  FL    +    S+DN T  +A   D GVG  ++  + L+   S   E
Sbjct: 831 KRKAFLATVEDSLVSSKDNLTWLDATVEDSGVGSSDLGDEYLYSEQSLNHE 881


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 745 LNTTNDKNKDSC--IALRVKKIEKFPTYDGGEIHKDVALIYTEKYNNTVVSKIKLGNYTD 572
           +  TNDK + S   I   V + EK+   D  E  +  A  + E Y  ++ + +   N  D
Sbjct: 499 ITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKD 558

Query: 571 KKSITDFEA 545
           K   +D EA
Sbjct: 559 KVDASDKEA 567


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 351 LTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTS 470
           + TIP+SSLP     P S     TL++ QS  P   + TS
Sbjct: 245 IKTIPLSSLPPLVAAPTSPNTSSTLIT-QSAAPTPIASTS 283


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 24/88 (27%), Positives = 35/88 (39%)
 Frame = +3

Query: 468 SDSLFSSPTYCSSLISPTSTFSP*PKASKSVIDFLSV*LPSFILETTVLLYFSVYINATS 647
           S ++ SSP Y +S + PTS     P +  S     S    +     T + Y      + +
Sbjct: 286 SATVSSSPFYSNSSVIPTSV----PSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSAT 341

Query: 648 L*ISPPSYVGNFSIFLTRRAIQLSLFLS 731
              SPP Y  N S+  T     +S F S
Sbjct: 342 FTSSPPFY-SNSSVIPTSVPSSVSSFTS 368


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 796 MILTSARCSQQAIDHVLLNTTNDKNK 719
           M L    C+QQA+  ++L+T N +N+
Sbjct: 210 MFLLIFSCAQQAVTSIVLDTENLRNR 235


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 26/82 (31%), Positives = 38/82 (46%)
 Frame = +3

Query: 348 PLTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTSDSLFSSPTYCSSLISPTST 527
           P T    SS  ++A P I+   + T VS QS        + +S +SSP   +S+ S TS 
Sbjct: 775 PQTAFTSSS--SSATPTITQSSISTSVSSQS--------SMNSSYSSPISSNSVTSSTSI 824

Query: 528 FSP*PKASKSVIDFLSV*LPSF 593
            S    +S + I  +S    SF
Sbjct: 825 ISSIASSSYTSIPSISSIASSF 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,241
Number of Sequences: 5004
Number of extensions: 68563
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)