Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f03
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0642 + 24686792-24686913,24687027-24687090,24688282-246884...    30   2.5  
03_02_0403 + 8160664-8163690                                           28   7.6  
02_05_0849 + 32202610-32202880,32204234-32205711,32205993-322061...    28   7.6  
12_01_0940 - 9303549-9303723,9303816-9303893,9304055-9304110,930...    28   10.0 

>02_04_0642 +
           24686792-24686913,24687027-24687090,24688282-24688401,
           24688685-24688774,24688848-24688986,24689664-24689786,
           24689884-24689942
          Length = 238

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +1

Query: 91  AEETDKGV-GIGNIVRQILFQRLSFYEETCL 180
           AEE ++GV  I N+V+ +L +R+S +E+ CL
Sbjct: 57  AEELERGVISIHNLVKDVLDKRMSNWEKYCL 87


>03_02_0403 + 8160664-8163690
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 697 VKKIEK-FPTYDGGEIHKDVALIYTEKYNNTVVSKIKLGNYTDKKS 563
           ++K+EK  P +DG    K    ++ E+Y  T+  K++   Y D +S
Sbjct: 529 IRKVEKPDPYFDGVVTTKTTLPVFLEQYETTLRGKLEREAYDDLRS 574


>02_05_0849 +
           32202610-32202880,32204234-32205711,32205993-32206143,
           32206378-32206559
          Length = 693

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -2

Query: 694 KKIEKFPTYDGGEI------HKDVALIYTEKYNNTVVSKIKLGNYTDKKSITDFEAFGY 536
           KK  + PT DG  +      H++      +K+N   +++I L + TD    + F  FGY
Sbjct: 455 KKYSEHPTVDGTRVEVYQPSHEEYQRSKNKKHNMKALAEIYLLSMTDVLITSGFSTFGY 513


>12_01_0940 -
           9303549-9303723,9303816-9303893,9304055-9304110,
           9304687-9304760,9304888-9304892,9304934-9304971,
           9308558-9308578,9308764-9308858,9309989-9310115
          Length = 222

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 259 WLEDQIKKNEESTQMTLVTYPAKPIVPDMSLHK 161
           W E QIKKN+        ++   P +P+M +H+
Sbjct: 104 WYELQIKKNKLCDMFDESSFGTTPSIPEMPVHR 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,102
Number of Sequences: 37544
Number of extensions: 365255
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)