Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f03
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical pr... 33 0.18
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 33 0.24
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 33 0.32
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 31 0.73
U67953-3|AAL13328.1| 321|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr... 29 5.1
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 29 5.1
Z72508-5|CAA96638.1| 525|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical
protein F58D2.2 protein.
Length = 610
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/132 (18%), Positives = 60/132 (45%)
Frame = -2
Query: 655 IHKDVALIYTEKYNNTVVSKIKLGNYTDKKSITDFEAFGYGLNVEVGEIKELQYVGLENR 476
+ K +++ +K +++ + Y D+ ++ E FGYG+ G++ Y+G ++R
Sbjct: 329 LFKSGVVVWGKKGRASIIEM--MSPYHDEDNVVGIE-FGYGVKTSKGDLAGEFYIGNDHR 385
Query: 475 ESDVGDYITGYLDCIDTKVPTCFKDIGGPAVFGNELIGIVVNGQNVCLKEMTAQFAINNK 296
E D +GY +K+ F G + +G+ + +++T + +
Sbjct: 386 EFVQSD-SSGYTSASSSKLAFFFPSDGCLRATAGIFSKKIASGKTMANEKVTVVGKLFGE 444
Query: 295 VVDILPIQTFKV 260
+++ +QT +V
Sbjct: 445 SGELITVQTPEV 456
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 339 TFCPLTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTSDSLFSSPTYCSSLISP 518
TF P+TT+ S P T P + V T + P +PT+ + T +++ P
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVP 527
Query: 519 TSTFSP 536
T+T SP
Sbjct: 528 TTTGSP 533
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 339 TFCPLTTIPMSSLPNTAGPPISLKHVGTLVSIQSR*PVM*SPTS-DSLFSSPTYCSSLIS 515
TF P+TT+ S P T P + V T + P +PT+ ++ +SPT ++L +
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTT 527
Query: 516 PTS 524
PT+
Sbjct: 528 PTT 530
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 345 CPLTTIPMSSLPNTAGPPIS 404
CP TT P + PNTA PP+S
Sbjct: 369 CPPTTFPTTRAPNTACPPVS 388
>U67953-3|AAL13328.1| 321|Caenorhabditis elegans Hypothetical
protein ZC13.2 protein.
Length = 321
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 347 SINNNTYELIAKHCWAPNIFKARGNFGIDTVKVTCYVVTDIRF 475
S + T L+ P+IF +FGI+ V +T ++ DI F
Sbjct: 120 SADVETVNLLLDSSGVPDIFMENASFGIEQVPMTTVIIGDIEF 162
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 432 IQSR*PVM*SPTSDSLFSSPTYCSSLISPTSTFS 533
++S PV+ SPT S S T+ S++SPT T S
Sbjct: 350 LRSSGPVLMSPTPGSGLPSTTFGGSILSPTLTAS 383
>Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical
protein F27D4.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 301 NKVVDILPIQTFKVWLEDQIKKNEESTQMTLVTYPA 194
N V+++ +QT + W ED + ++ + T +VT+ A
Sbjct: 270 NADVEVIDLQTIQPWDEDHVVESVQKTGRLIVTHEA 305
>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
protein C09G1.2 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 284 NINNFIVNCKLSSHFFEANILSINNNTYELIAK 382
++NNF VNC L S+ E+N I +L+ K
Sbjct: 714 DLNNFTVNCSLDSNSNESNDEPIKTEKTQLLLK 746
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 432 IQSR*PVM*SPTSDSLFSSPTYCSSLISPTSTFS 533
++S PV+ SPT S S T+ S++SPT T S
Sbjct: 350 LRSSGPVLMSPTPGSGLPSTTFGGSILSPTLTAS 383
>Z72508-5|CAA96638.1| 525|Caenorhabditis elegans Hypothetical
protein F28H7.6 protein.
Length = 525
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 646 DVALIYTEKYNNTVVSKIKLGNYTDKKSITDFEAFGYGLNV 524
D ++ EKY+N + + K G+ T+F+ F +G+N+
Sbjct: 74 DDQVLTDEKYSNCTILQSKNGSVLKLNFWTNFDTFKFGVNL 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,658,593
Number of Sequences: 27780
Number of extensions: 377649
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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