Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10f03
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    30   0.022
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    30   0.022
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.47 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
 Frame = -2

Query: 538 YGLNVEVGEIKELQYVGLENRESDVGDYITGYLDCIDTKVPTCFKDIGGPAVFGNEL-IG 362
           YG    +    +L+Y  +EN +++   + T  ++ + TK     +DI  P V   +L + 
Sbjct: 66  YGQTNHISLTLDLEYELVENLQANEKPWSTLPIEDL-TKSDN--EDITYPTVLEVQLNLP 122

Query: 361 IVVNGQNVCLKEMT-AQFAINNKVVDILPIQTFKVWLEDQIKKNEESTQMTLVTYPAKPI 185
           I+ +G  + +     A   + N+ + ILPI  + +  +   ++N E  +    TYP  P+
Sbjct: 123 ILKDGVQIFIAPNNGAVKVLANEFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNPV 182

Query: 184 VPDMSLHKMTTSG 146
           +   SL  ++ +G
Sbjct: 183 LFISSLENISLNG 195


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
 Frame = -2

Query: 538 YGLNVEVGEIKELQYVGLENRESDVGDYITGYLDCIDTKVPTCFKDIGGPAVFGNEL-IG 362
           YG    +    +L+Y  +EN +++   + T  ++ + TK     +DI  P V   +L + 
Sbjct: 104 YGQTNHISLTLDLEYELVENLQANEKPWSTLPIEDL-TKSDN--EDITYPTVLEVQLNLP 160

Query: 361 IVVNGQNVCLKEMT-AQFAINNKVVDILPIQTFKVWLEDQIKKNEESTQMTLVTYPAKPI 185
           I+ +G  + +     A   + N+ + ILPI  + +  +   ++N E  +    TYP  P+
Sbjct: 161 ILKDGVQIFIAPNNGAVKVLANEFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNPV 220

Query: 184 VPDMSLHKMTTSG 146
           +   SL  ++ +G
Sbjct: 221 LFISSLENISLNG 233


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = -2

Query: 532 LNVEVGEIKELQYVGLENRESDVGDYITGYLDCIDTKVPTCFKDIGGPAVFGNELIGIVV 353
           LN+    ++++  +GL  R+SD G       D  D    +C  DI    +  NE+  +  
Sbjct: 176 LNLTENRLRDINDIGLNRRDSDDGS------DGNDGDESSCRADIRILDLSRNEITRLQE 229

Query: 352 NGQNVCLKEMTAQFAINNKVVDI 284
           N   + L+++       N +V+I
Sbjct: 230 NSPLLDLRQLQELHLQRNAIVEI 252


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 40  HQNNLSNQSEDNQTITNAEETDKGVGIGNIVRQ 138
           H  N  NQ+ DNQ   N    ++     N  +Q
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQ 455


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 291 TTLLLIAN*AVISLRQTFCPLTTIPMSS 374
           TT +     +VIS+  T  P+T++P SS
Sbjct: 836 TTTINTPTTSVISMSGTTVPITSLPASS 863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,462
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)