Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e24
         (843 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T3J9 Cluster: AT11889p; n=3; Sophophora|Rep: AT11889p...    87   5e-16
UniRef50_Q17IZ7 Cluster: M12 mutant protein, putative; n=1; Aede...    66   8e-10
UniRef50_Q16RJ6 Cluster: Fkbp-rapamycin associated protein; n=1;...    34   3.9  
UniRef50_A3EP79 Cluster: Putative GTP binding protein; n=1; Lept...    33   9.0  

>UniRef50_Q8T3J9 Cluster: AT11889p; n=3; Sophophora|Rep: AT11889p -
           Drosophila melanogaster (Fruit fly)
          Length = 441

 Score = 87.0 bits (206), Expect = 5e-16
 Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
 Frame = -3

Query: 640 PNLPRWWQAKVIQYAFAHPHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKR 461
           P+  +WW+   +  AF  P + ARLE+ MG+N+V+LTD++YM EL ERI     + L  R
Sbjct: 36  PSNKKWWEDPDVIVAFNLPRISARLERLMGTNVVKLTDRSYMKELRERIDEDYRKQLLSR 95

Query: 460 ISSRVLDEMERLKRLILVGKTPLKECPPELFHHPVFVFWRMVNREVARASKKRADAYYRK 281
           I +R L E+ER + LI+ GK+ +   P EL + P+F+  +  N E+    K+R+     K
Sbjct: 96  IRARELKEVERERMLIIEGKSDV--IPDELANDPIFMVNKDANMEI---QKERS-----K 145

Query: 280 LK-ASQKFDQSMDXXXXXXXXXXXXXXXXXEQLLAKCREEIEEQKQLDIEKGVRFTDEQF 104
           LK A +K  + +                   +LLAK RE   +QK L  +      +   
Sbjct: 146 LKTAREKNAERLKLQGVKWERERLQHAAKEAELLAKKRERHRQQKLLVEQYRTEDAERGM 205

Query: 103 ALMKYETND 77
            L++ +  D
Sbjct: 206 DLLRIDNED 214



 Score = 38.3 bits (85), Expect = 0.24
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = -3

Query: 169 EEIEEQKQLDIEKGVRFTDEQFALMKYETNDVKTLKNLTTVDELYALADKII 14
           EE+E + + +  +G+  + +Q+  +++E   +  L+N   + ELY LA++II
Sbjct: 353 EELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLAEEII 404


>UniRef50_Q17IZ7 Cluster: M12 mutant protein, putative; n=1; Aedes
           aegypti|Rep: M12 mutant protein, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 317

 Score = 66.5 bits (155), Expect = 8e-10
 Identities = 39/94 (41%), Positives = 52/94 (55%)
 Frame = -3

Query: 586 PHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISSRVLDEMERLKRLILV 407
           P V A+LEK MG+N+VRLTD+ YM EL+ RI+      L KRIS R   E+ER + LIL 
Sbjct: 10  PRVTAQLEKLMGTNVVRLTDRKYMQELQRRIQQDYNVTLEKRISEREAKELERERNLILS 69

Query: 406 GKTPLKECPPELFHHPVFVFWRMVNREVARASKK 305
           G     +  PE     VF   +  N+ +    +K
Sbjct: 70  G---AGDSIPEDMSSSVFTVNKKTNQHICNKREK 100


>UniRef50_Q16RJ6 Cluster: Fkbp-rapamycin associated protein; n=1;
            Aedes aegypti|Rep: Fkbp-rapamycin associated protein -
            Aedes aegypti (Yellowfever mosquito)
          Length = 2151

 Score = 34.3 bits (75), Expect = 3.9
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
 Frame = -3

Query: 622  WQAKVIQYAF----AHPHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRIS 455
            W  K++++      AH      + K + SNL     K+ +  L +      EE      +
Sbjct: 1458 WGKKMVEFNTEANTAHNVNLEEINKILPSNLSEEVQKSILLILNQHEVISEEEEFGLNET 1517

Query: 454  SRVLDEMERLKRLILVGKTPLKECPPELFHHPVFVFWRMVNREVARASKKRADAYYRKLK 275
            S   D +E LK  +      L  CPPE     V + WR  ++ V    +  A AY+R L+
Sbjct: 1518 SST-DLLEALKETV----PELHNCPPEKLQSIVEI-WRQTHKTVYGYYEAAASAYFRFLE 1571

Query: 274  ASQKFD 257
             S   +
Sbjct: 1572 LSSSIE 1577


>UniRef50_A3EP79 Cluster: Putative GTP binding protein; n=1;
           Leptospirillum sp. Group II UBA|Rep: Putative GTP
           binding protein - Leptospirillum sp. Group II UBA
          Length = 518

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 28/79 (35%), Positives = 38/79 (48%)
 Frame = -3

Query: 631 PRWWQAKVIQYAFAHPHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISS 452
           PR  Q      A   P  +A L   + +NL R+T +N   E  ERIR++ EE    R SS
Sbjct: 86  PRLPQVDSFSLATLDPDPKAPLPWTLEANL-RVTPRNL--EGHERIRSIEEEMRRVRTSS 142

Query: 451 RVLDEMERLKRLILVGKTP 395
           R    +   +R ILV  +P
Sbjct: 143 R--HHLSERERAILVSASP 159


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,660,597
Number of Sequences: 1657284
Number of extensions: 12899210
Number of successful extensions: 41282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41249
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)