Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e24
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    32   0.12 
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    30   0.36 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    29   0.82 
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.5  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    27   3.3  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.8  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   7.7  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 577 RARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRI-SSRVLDEMERLKRLILVGK 401
           +  LE H+ S +    D++ + ++EE++    E+N+ + I   R L E  +   L  V K
Sbjct: 72  KEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK 131

Query: 400 TP 395
            P
Sbjct: 132 KP 133


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 151 KQLDIEKGVRFTDEQF----ALMKYETNDVKTLKNLTTVDELYALAD 23
           +Q+  EK + F D  F      + YE+ND+++++N    DE   LAD
Sbjct: 156 EQMSFEKVIPFNDASFFHPHCWVDYESNDIESVQNCWLGDENLLLAD 202


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 511 ELEERIRAVNEENLNKRISSRVLD 440
           E+E   R V+E+  N RISSR+LD
Sbjct: 301 EIETTKRVVDEDTSNARISSRILD 324


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 184 LAKCREEIEEQKQLDIEKGVRFTDEQFALMKYETND------VKTLKNLTTVDELYALAD 23
           LAKC E  EE+    +++G++   ++F L+K    D      V    N+ T  E Y + D
Sbjct: 191 LAKCEEYFEERSLASLQRGLK---DEFVLVKIYATDKNFEQKVVAEFNVATNVEGYFIID 247

Query: 22  KII 14
           ++I
Sbjct: 248 EVI 250


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 317 SCNFPVNHSPEHKYWVVEKFRRTLL*RGFSNKDQSFQSFHL--IKHSARDSFVQIFFVDS 490
           S +FP  +  E   W ++KF++ L     ++ DQ    F +  I  S  ++F +I   + 
Sbjct: 23  SVDFPGYYFDEDNIWDLDKFKKNLK-VSITSLDQETMVFEISGIDASIANAFRRILIAEI 81

Query: 491 SNSFFQFGHVV 523
               F+F +++
Sbjct: 82  PTLAFEFVYII 92


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 115 DEQFALMKYETNDVKTLKNLTTVDELYALADKII 14
           D +F  +      V TLK  T  DEL ALA ++I
Sbjct: 384 DMRFHKLSEVRQHVNTLKEATKDDELAALASRVI 417


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 540 CGSRTRTT*PNWKK 499
           CGS T+ T PNW+K
Sbjct: 271 CGSPTQATMPNWEK 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,081
Number of Sequences: 5004
Number of extensions: 55189
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)