Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e24
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 31 0.87
05_04_0300 - 19969066-19969535,19971216-19972686 31 1.1
01_06_1479 + 37657525-37657878,37658075-37658254,37658703-376588... 30 2.7
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 29 4.6
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 29 4.6
11_06_0585 - 25230630-25230743,25230840-25231122,25231203-252313... 29 6.1
05_07_0166 + 28109120-28109484,28109951-28110056 28 8.1
03_06_0486 - 34261577-34261692,34261830-34262094,34263164-342632... 28 8.1
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 8.1
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 31.5 bits (68), Expect = 0.87
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 227 LAGIFLIHRLI--EFLGSFQFPVIGIGTFF*CSCNFPVNHSPEH 352
+AG+ +I R+I E +F +P + T + FPVN P H
Sbjct: 459 VAGVSVIERVIRSEAFANFTYPYFSVETLLNMTAGFPVNLRPRH 502
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3
Query: 574 ARLEKHMGS-NLVRLTDKNYMTELEERIRAVNE--ENLNKRISSRVLDEMERLKRLILVG 404
ARL ++ S L R K Y+ ELEE++++++ +LN RIS V+ E L++ + G
Sbjct: 177 ARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSRISF-VVAENATLRQQLSGG 235
Query: 403 KTPLKECPPELFHHP 359
CPP + P
Sbjct: 236 SV---NCPPPGVYPP 247
>01_06_1479 +
37657525-37657878,37658075-37658254,37658703-37658831,
37658936-37659084,37659245-37659383,37659969-37660274
Length = 418
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 496 FFLPIRSCSSCP*AAPGLIPCASPAAHGRAGGQRHIVSLLPATSEANWAVEXFSF 660
F L +RS S P AAP P A+ +G G + V L + N + F F
Sbjct: 107 FLLDLRSRLSLPDAAPSTNPAAADRGNGTEQGDQGSVPGLAISGAGNAKIPPFEF 161
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 589 HPHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEEN--LNKRISSRVLDEMERLKRL 416
H ++ L + + R K YM+ELE R++ + N L +R+S+ L ++ R
Sbjct: 655 HRRLKRLLRNRVSAQQARERKKAYMSELEARVKDLERSNSELEERLST--LQNENQMLRQ 712
Query: 415 ILVGKTPLKECP 380
+L T + P
Sbjct: 713 VLKNTTANRRGP 724
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 586 PHVRAR-LEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISSRVLDEM 434
P VR+R +HMG+N + ++ EL +R+ A N+E + + LDE+
Sbjct: 333 PDVRSRWCMRHMGANFYKQFKNKHLMELFKRLCAQNQEKKFNELWDK-LDEL 383
>11_06_0585 -
25230630-25230743,25230840-25231122,25231203-25231373,
25231451-25232298,25232384-25232812,25232889-25233266,
25233396-25233488
Length = 771
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 559 HMGSNLVRLTDKNYMTELEERIRAVNEENLN 467
H+ N+ L DK + +LEE++ A+ E N N
Sbjct: 716 HVCHNMRSLADKVTLLDLEEKLSAIPENNFN 746
>05_07_0166 + 28109120-28109484,28109951-28110056
Length = 156
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 514 SCSSCP*AAPGLIPCASPAAHGRAGGQRHIVSLLPAT---SEANW 639
S SS P A PGL A+P H RA +R + A S+A W
Sbjct: 19 SVSSSPSARPGLRGVAAPVQHARARRRRGAAVVARAAALPSDAEW 63
>03_06_0486 -
34261577-34261692,34261830-34262094,34263164-34263277,
34263371-34264795
Length = 639
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 442 DEMERLKRLILVGKTPLKECPPELFHH 362
D + + R+ VG +P C P LFHH
Sbjct: 518 DALLEMFRIDYVGSSPYISCNPSLFHH 544
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = -3
Query: 607 IQYAFAHPHVRA-RLEKHMGSNLVRL-TDKNYMTELEERIRAVNEENLNKRISSRVL-DE 437
+QYA+ +A LE ++LV++ T +N TE+ E+ R + EEN + +R L +
Sbjct: 1245 LQYAYGEVSTKASHLEVLRRNHLVQIDTLENKHTEIMEKHRHLGEENTSANKENRKLQNH 1304
Query: 436 MERLKRLILVGKTPLK 389
++ L+ + + + L+
Sbjct: 1305 VQELEAQLQLARQKLR 1320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,307,895
Number of Sequences: 37544
Number of extensions: 369547
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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