Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e23
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 232 4e-62
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 30 0.36
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 1.4
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.5
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 27 2.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 4.4
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 26 5.8
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.7
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 232 bits (567), Expect = 4e-62
Identities = 107/143 (74%), Positives = 121/143 (84%)
Frame = -3
Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
MGRMH+ GKGI+ SALPY RS P W K AD V EQI K KKG++PSQIGV LRDSHG+
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 69 RIHRLARYYKTKSVLPPNWKYES 1
RIHRLARYY+ LPP WKYES
Sbjct: 121 RIHRLARYYRKVGALPPTWKYES 143
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.9 bits (64), Expect = 0.36
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -3
Query: 243 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 64
+R KK+ +KA G EDL +L + + + +++K RL ++ RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682
Query: 63 HRLARYYKTKSVLPPNWKYES 1
L R Y+ +++ P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 132 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 31
K+ R +K+ D ++ +LVESR+H L R+ +K+
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -3
Query: 225 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 46
KKI+ I L D YYL KKA + + N +K+SK I +E + +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241
Query: 45 YKTKSVLPPNW 13
+ L +W
Sbjct: 242 VNLEKYLTKSW 252
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -3
Query: 345 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 172
++DD Q + L QIG+ L D G A V T + L D+ PE
Sbjct: 66 SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121
Query: 171 DLYYLIKKAVAMRKHLE 121
+ L K + +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 355 PGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNRRSDNDNKRIQKDGCRKTN 507
P R +A+R+ + +V T F L D+DN QKD KT+
Sbjct: 1352 PSRQNSALRREQSVRAPPSNVAVTSANSFELLEEHDHDNDGGQKDSNSKTS 1402
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +1
Query: 298 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 453
TL+SK FL+ Q Q AV QR D L SV + V +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 635 NEYFYFVLFFLISICMYFLSFTFF 564
+EY YF LFF I++ + F F +
Sbjct: 144 DEYGYFYLFFSIALFLLFSDFLIY 167
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = -3
Query: 228 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 103
G+ + ++ A + PE+L+ +KK+ + +K + K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,008
Number of Sequences: 5004
Number of extensions: 59220
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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