Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e23
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 220 1e-57
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 198 4e-51
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 192 3e-49
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 144 8e-35
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 31 1.1
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 2.0
01_06_1039 - 34011133-34012218 30 2.0
05_05_0331 + 24142484-24143548 29 2.6
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 29 3.4
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 29 3.4
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540... 28 6.0
08_01_0010 + 80052-81419 28 7.9
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 28 7.9
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 220 bits (537), Expect = 1e-57
Identities = 102/140 (72%), Positives = 117/140 (83%)
Frame = -3
Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 69 RIHRLARYYKTKSVLPPNWK 10
RIHRLARYYK LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 198 bits (482), Expect = 4e-51
Identities = 90/140 (64%), Positives = 113/140 (80%)
Frame = -3
Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
+ VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVES
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120
Query: 69 RIHRLARYYKTKSVLPPNWK 10
R+HRL RYY+ +P +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 192 bits (467), Expect = 3e-49
Identities = 98/149 (65%), Positives = 110/149 (73%), Gaps = 17/149 (11%)
Frame = -3
Query: 405 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 277
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 276 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 97
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDS
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150
Query: 96 KFRLILVESRIHRLARYYKTKSVLPPNWK 10
KFRLILVESRIHRLARYYK LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 144 bits (348), Expect = 8e-35
Identities = 70/106 (66%), Positives = 80/106 (75%)
Frame = -3
Query: 336 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 157
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 156 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 19
IKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 462 QRQQENPKRWLPEDKLVTVLPG 527
Q+QQ+ P WLP DK+ LPG
Sbjct: 314 QQQQQLPPSWLPADKVPRFLPG 335
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 393 GRYPYQERAYDPCLRLFT 446
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>01_06_1039 - 34011133-34012218
Length = 361
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 644 FIHNEYFYFVLFFLISICMYFLSFTFFNGWPFPVSLTCQAWQYC 513
+++ + F+ F +I Y L +N WPFP+SLT +C
Sbjct: 29 YMYVAVWIFLSFTVIVYNKYILDPKMYN-WPFPISLTMVHMAFC 71
>05_05_0331 + 24142484-24143548
Length = 354
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 620 FVLFFLISICMYFLSFTFFNGWPFPVSLTCQAWQYC 513
F+ F +I Y L +N WPFP+SLT +C
Sbjct: 30 FLSFAVIVYNKYILDPKMYN-WPFPISLTMVHMAFC 64
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 29.1 bits (62), Expect = 3.4
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -3
Query: 390 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-KKIL 214
S +PY T L D++K+Q+ + KG+T + V++ + QV KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274
Query: 213 RIMKAMG---LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
K G LA ++ ++ Y+ K K + R+ D L+ +S
Sbjct: 275 EFCKNEGLVLLADEVYQENIYVEDKKFHSFKKIARSMGYTDDDLPLVSFQS 325
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = -3
Query: 222 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 64
KI R+++A+ A D LP +L ++ AV MR R+RK+KD++ ++++E R
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163
Query: 63 HRLARY 46
HR Y
Sbjct: 164 HRGGEY 169
>02_01_0722 +
5405550-5405810,5406654-5407399,5407575-5408046,
5408129-5408296,5408301-5408418,5408845-5409056,
5409165-5409287,5409395-5409880,5409976-5410401
Length = 1003
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -1
Query: 542 SLTCQAWQYCH*FVFRQPSFWILLLSLSDRRFSKKPQTWV 423
+++ Q Q C+ +F PS+W++ +F P+ W+
Sbjct: 561 AISHQRLQNCNIAIFYLPSYWLITTGYGAGQFDIYPREWI 600
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 328 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 420
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 617 VLFFLISICMY-FLSFTFFNGWPFPVSLTC-QAWQYCH 510
VL FL+ C Y + F FF+ W F V + C + CH
Sbjct: 423 VLQFLVCCCCYGHIQFVFFSSW-FVVVMACTMSSMACH 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,059
Number of Sequences: 37544
Number of extensions: 383381
Number of successful extensions: 928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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