Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e23
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal prot...   273   2e-73
X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal prot...   273   2e-73
AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p pro...   273   2e-73
AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-P...   273   2e-73
AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-P...   273   2e-73
Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal prot...   259   3e-69

>X91854-1|CAA62965.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  273 bits (669), Expect = 2e-73
 Identities = 126/143 (88%), Positives = 137/143 (95%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTKSVLPPNWKYES
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYES 143


>X91853-1|CAA62964.1|  151|Drosophila melanogaster ribosomal protein
           S13 protein.
          Length = 151

 Score =  273 bits (669), Expect = 2e-73
 Identities = 126/143 (88%), Positives = 137/143 (95%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTKSVLPPNWKYES
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYES 143


>AY058536-1|AAL13765.1|  151|Drosophila melanogaster LD23958p
           protein.
          Length = 151

 Score =  273 bits (669), Expect = 2e-73
 Identities = 126/143 (88%), Positives = 137/143 (95%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTKSVLPPNWKYES
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYES 143


>AE014134-1471|ABC65883.1|  151|Drosophila melanogaster CG13389-PB,
           isoform B protein.
          Length = 151

 Score =  273 bits (669), Expect = 2e-73
 Identities = 126/143 (88%), Positives = 137/143 (95%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTKSVLPPNWKYES
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYES 143


>AE014134-1470|AAF52649.1|  151|Drosophila melanogaster CG13389-PA,
           isoform A protein.
          Length = 151

 Score =  273 bits (669), Expect = 2e-73
 Identities = 126/143 (88%), Positives = 137/143 (95%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI KLGKKGLTPS+IG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTKSVLPPNWKYES
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYES 143


>Z19052-1|CAA79496.1|  151|Drosophila melanogaster ribosomal protein
           S17 protein.
          Length = 151

 Score =  259 bits (634), Expect = 3e-69
 Identities = 120/143 (83%), Positives = 132/143 (92%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMHAPGKGISQSALPYRR+VP+WLKL ADDVKEQI K G++G    QIG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKAGQEGSDSLQIGIILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
           AQVRFV G KILRIMK++GL PD+PEDLY++IKKAVA+RKHLERNRKDKD KFRLILVES
Sbjct: 61  AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTKSVLPPNWKYES
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYES 143


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,142,070
Number of Sequences: 53049
Number of extensions: 646190
Number of successful extensions: 1635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)