Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e23
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   235   2e-62
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   9.4  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  235 bits (576), Expect = 2e-62
 Identities = 106/143 (74%), Positives = 128/143 (89%)
 Frame = -3

Query: 429 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 250
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 249 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 70
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 69  RIHRLARYYKTKSVLPPNWKYES 1
           RIHRLARYYKTK  LPP WKYES
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYES 143


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = -3

Query: 483 LDSLVVVVRSAI**KAANMGRMHAPGKGISQSALPYRRSVPTWL 352
           LD++V+ V+++I    A + RMH   +G+++S  PY + + T++
Sbjct: 443 LDAIVIEVKNSI---RAIVARMHVETRGMTKSVAPYMQELLTYI 483


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 400 YLPVGAALPPQ-CP-YLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKI 236
           YL V A LP   CP +  E D +R      QTWK G+   T  C A    +S P  I
Sbjct: 93  YLAVKADLPNNTCPAFPFETDIKR---PGNQTWKSGNGWTTRLCKAGWTLFSRPDSI 146


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = -1

Query: 605 LISICMYFLSFTFFNGWPFPVSLTCQAWQYCH*FVFRQPSFWILLLSLSDRRFSKKPQTW 426
           L+  C  FL    F  W       C  WQ C    F +  FW +LL +        P T+
Sbjct: 412 LLFRCTAFLDIAMF--WMNVTYAYCLQWQLCCRLGFFRFVFWAMLLGVVSTTVMFIPMTY 469

Query: 425 VV 420
           V+
Sbjct: 470 VM 471


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 322 NLQTWKEGSHSLTNWCNAEGFTW 254
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 322 NLQTWKEGSHSLTNWCNAEGFTW 254
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 358 LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 218
           +V   C  C  T L   + G+H L+    A G++  CP  I N + +
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICPLCIGNTEME 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,539
Number of Sequences: 27780
Number of extensions: 335254
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)