Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e22
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-5|AAK26144.1|   98|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   4.7  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   4.7  
Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    27   6.2  
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    27   6.2  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    27   8.2  
AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC090999-5|AAK26144.1|   98|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.10 protein.
          Length = 98

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 374 SSNGAILTGTTSASRK*LIPTNMRMQMSQKYTLKEPILCSFSMLN 508
           S    I+  T SAS K L+    R Q     +L  PI C FS LN
Sbjct: 29  SLQNRIVEQTLSASAKTLLIFKKRTQFLNSLSLPLPIWCLFSCLN 73


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = -2

Query: 288 LVVKCDQEGDNTCKILCNALATA----TKAKGPEILCSRLKDVNELKLSAFYKTCDKPWS 121
           L+V  D E   T   + N L +A    T ++     C RLKD+ E KLS  +    K  +
Sbjct: 701 LIVSLDHEFRETVSCVNNCLESARTALTNSQRTVTECDRLKDIFEEKLSGGFVKDQKRQA 760

Query: 120 YANMTAEAPLCCENSQVKVCSS 55
               T  +      S  K  S+
Sbjct: 761 DNKKTTTSAAATSGSSAKSVSN 782


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = -2

Query: 288 LVVKCDQEGDNTCKILCNALATA----TKAKGPEILCSRLKDVNELKLSAFYKTCDKPWS 121
           L+V  D E   T   + N L +A    T ++     C RLKD+ E KLS  +    K  +
Sbjct: 701 LIVSLDHEFRETVSCVNNCLESARTALTNSQRTVTECDRLKDIFEEKLSGGFVKDQKRQA 760

Query: 120 YANMTAEAPLCCENSQVKVCSS 55
               T  +      S  K  S+
Sbjct: 761 DNKKTTTSAAATSGSSAKSVSN 782


>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -2

Query: 243 LCNALATATKAKGPEILCSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKV 64
           L N  A    AK PE + +  +D+ E    A    CDK +  A   A   +C +N + KV
Sbjct: 68  LDNIGALFDAAKNPETMKAMCRDMTEASKCATAAGCDKIFIGAISNAFQFVCMDNLE-KV 126

Query: 63  CSSVVTLK 40
            S +  ++
Sbjct: 127 SSQIACIQ 134


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 139 VRQTMELRKHDCRSPTLL--RKFPSESLFVGGNTKIXQCNRKQRLP 8
           V+Q  E+    C+SPT+   +KF     +     +I + +R+Q LP
Sbjct: 403 VQQLQEINAQSCKSPTMTMNKKFTLAKAYQRVQNEIEKIDREQILP 448


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 139 VRQTMELRKHDCRSPTLL--RKFPSESLFVGGNTKIXQCNRKQRLP 8
           V+Q  E+    C+SPT+   +KF     +     +I + +R+Q LP
Sbjct: 593 VQQLQEINAQSCKSPTMTMNKKFTLAKAYQRVQNEIEKIDREQILP 638


>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 507 FNIENEHKMGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPF 379
           F+++N++     R YF  + I  LV    FL+   VP+ IAPF
Sbjct: 231 FSVQNQNLQ---RQYFIALVIQALVP-TMFLITPAVPILIAPF 269


>AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical
           protein K12B6.3 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 124 ELRKHDCRSPTLLRKFPSESLFVGGNTKI 38
           E R HDC+  T LRKF    L   G  K+
Sbjct: 137 ETRTHDCKDLTRLRKFFEAVLAYTGYAKV 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,825
Number of Sequences: 27780
Number of extensions: 252342
Number of successful extensions: 746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)