Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e20
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   3.2  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    24   3.2  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    23   4.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    23   7.5  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    23   7.5  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    22   9.9  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    22   9.9  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    22   9.9  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 190 EFLKTKVRP*FYHC 149
           E+L+T V P F+HC
Sbjct: 688 EYLRTDVLPEFFHC 701


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 168 RTFVFKNSTYF-QIFYEN 218
           +TF+F NSTY    FY+N
Sbjct: 159 KTFIFMNSTYVGGAFYQN 176


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 180 FKNSTYFQIFYENFCDTDNI 239
           F ++ Y  +FY N CD+  +
Sbjct: 157 FPSTNYSNVFYPNNCDSKEV 176


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 218  VFVKNLKICGILKDEGSTLI 159
            +FVK+L++C + KD    L+
Sbjct: 1407 LFVKSLQLCSLYKDTKFILV 1426


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SSAIVLNNSVSTSDDKSVTHTRCIYTQTMVESG 166
           SS + L  ++S S   S  HT  +Y ++MVE G
Sbjct: 78  SSFVELGQALSHSSSNS--HTYIMYGKSMVEIG 108


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 32  IKLNNDQ*TLHDSSAIVLNNSVSTSDDKSVTH 127
           I L   + T++D++A   +  V  S+DK  TH
Sbjct: 563 INLIQKKSTMYDTNARANDTDVDFSNDKQNTH 594


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 227 ITKVFVKNLKICGILKDEGSTLILPLF 147
           I K  +  L +CGILK+  + +   LF
Sbjct: 299 IQKTSIVTLSVCGILKEIITIIASTLF 325


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 59  LHDSSAIVLNNSVSTSDDKS 118
           LHDS+    NN+    DD S
Sbjct: 324 LHDSNVSTFNNTTILDDDYS 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 969,236
Number of Sequences: 5004
Number of extensions: 15969
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)