Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e20
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    29   0.44 
AC006832-6|AAY55905.1|  170|Caenorhabditis elegans Hypothetical ...    26   3.1  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    25   5.4  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    25   5.4  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    25   9.4  

>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 114 LSSDVLTLLFNTIADESCNVY*SLFSFITRNKTC 13
           LSS +LTL  +  A + CN++  L      N TC
Sbjct: 6   LSSHLLTLFNSNAASQYCNIFFFLLRLFLSNNTC 39


>AC006832-6|AAY55905.1|  170|Caenorhabditis elegans Hypothetical
           protein ZK355.7 protein.
          Length = 170

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 17  VLFRVIKLNNDQ*TLHDSSAIVLNN 91
           +L  +I  NNDQ  ++D+ ++ LNN
Sbjct: 120 LLNNIISANNDQLVMYDNPSLFLNN 144


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 239 DVVRITKVFVKNLKICGILKDEGSTL 162
           D+V +T  F  N+ + G+LK  G  L
Sbjct: 14  DIVGVTLTFCVNIVLLGLLKTRGKNL 39


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 239 DVVRITKVFVKNLKICGILKDEGSTL 162
           D+V +T  F  N+ + G+LK  G  L
Sbjct: 14  DIVGVTLTFCVNIVLLGLLKTRGKNL 39


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 89   NSVSTSDDKSVTHTRC 136
            NS++TSDD +V H  C
Sbjct: 1030 NSMNTSDDHTVAHAIC 1045


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,286,768
Number of Sequences: 27780
Number of extensions: 87219
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)