Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10e20
         (242 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   0.71 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   5.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   6.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   6.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   6.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   6.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    19   8.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    19   8.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    19   8.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 0.71
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 PSSLRIPHIFRFFTKTFVIRTTS 240
           P+SL +P I ++   TF++ T S
Sbjct: 288 PTSLVLPLIAKYLLFTFIMNTVS 310


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 180 FKNSTYFQIFYENFCDTD 233
           +KN+  +QI+  +F D+D
Sbjct: 27  YKNALVYQIYPRSFQDSD 44


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 149 FECKYIVYE*PTYHRTY*RYC 87
           F+C+Y       Y++ Y ++C
Sbjct: 434 FQCRYPNASVTPYNKNYTKFC 454


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 174 FVFKNSTYFQIFYENFCDT 230
           F++ N T  Q+  +  C+T
Sbjct: 20  FIYSNETIAQVTDDENCET 38


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 174 FVFKNSTYFQIFYENFCDT 230
           F++ N T  Q+  +  C+T
Sbjct: 20  FIYSNETIAQVTDDENCET 38


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 215 FVKNLKICGILKDEG 171
           F+KNL++  I +D G
Sbjct: 102 FMKNLELTQIRRDRG 116


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  NNSVSTSDDKSVTHTRCIYTQTMVESGSNLR 178
           N+ + +++     H    +TQ + ES SNL+
Sbjct: 377 NSCLGSTETYYSKHNTQQFTQYIPESSSNLQ 407


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 195 MWNS*RRRFDPD 160
           +W+S   ++DPD
Sbjct: 101 LWDSLANKYDPD 112


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 195 MWNS*RRRFDPDS 157
           +WN   +R DP S
Sbjct: 809 LWNMNNKRLDPKS 821


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 195 MWNS*RRRFDPD 160
           +W+S   ++DPD
Sbjct: 101 LWDSLANKYDPD 112


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 195 MWNS*RRRFDPD 160
           +W+S   ++DPD
Sbjct: 101 LWDSLANKYDPD 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,012
Number of Sequences: 438
Number of extensions: 992
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)