Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10e19
(413 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 23 1.0
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 7.3
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 7.3
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 20 9.6
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 20 9.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.6
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 20 9.6
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 23.4 bits (48), Expect = 1.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 332 IYRVYNGKMSTETQNVQN 279
I VYNG ++ E +NVQ+
Sbjct: 44 IDEVYNGNVNVEDENVQS 61
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 20.6 bits (41), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 384 KFILL*CLFEKLFYFVTNLQSLQWQN 307
KFI L L+E YF N + LQ N
Sbjct: 155 KFIQLPPLYEMCPYFFFNSEVLQKAN 180
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 20.6 bits (41), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 384 KFILL*CLFEKLFYFVTNLQSLQWQN 307
KFI L L+E YF N + LQ N
Sbjct: 155 KFIQLPPLYEMCPYFFFNSEVLQKAN 180
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 9.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -1
Query: 410 CYFQNKILTNLFC 372
CY++ +L LFC
Sbjct: 113 CYYETWVLGPLFC 125
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 20.2 bits (40), Expect = 9.6
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -2
Query: 109 CRHCDRKY 86
C HCDR++
Sbjct: 40 CSHCDRQF 47
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGRP 379
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGRP 379
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGRP 379
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGRP 379
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGRP 379
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGRP 379
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGRP 447
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 56 KRSARATPETVLAVAVSTPLERARP 130
K SA P + A TP+ RP
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGRP 447
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 20.2 bits (40), Expect = 9.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -1
Query: 410 CYFQNKILTNLFC 372
CY++ +L LFC
Sbjct: 79 CYYETWVLGPLFC 91
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,502
Number of Sequences: 438
Number of extensions: 1518
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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